Browse Element(s) Details


Os.55672.1.S1_at

Description gb:AK108532.1
DB_XREF= gi:32993741
TID=Os.55672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C04, full insert sequence.
FL= gb:AK108532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1538011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55672.1.S1_at--180--9811Chr03:8392524..8392548 (25 bp)
TACCCATAATTCCACGATACACTTC
LOC_Os03g15380
Os.55672.1.S1_at--576--331Chr03:8392540..8392564 (25 bp)
ATACACTTCGTATTCGGCATTCCCT
LOC_Os03g15380
Os.55672.1.S1_at--33--1031Chr03:8393227..8393251 (25 bp)
AGGTCCAAGCTAACGTGTACTACTG
LOC_Os03g15380
Os.55672.1.S1_at--287--2951Chr03:8393272..8393296 (25 bp)
AAGGCTGTGTGTTCTACAGGTGCCC
LOC_Os03g15380
Os.55672.1.S1_at--486--9871Chr03:8393286..8393306 (21 bp)
TACAGGTGCCCTTATTTCTCGATAC
LOC_Os03g15380
Os.55672.1.S1_at--228--10211Chr03:8393298..8393715 (25 bp)
TATTTCTCGATACACACAGGCTGGT
LOC_Os03g15380
Os.55672.1.S1_at--1141--7251Chr03:8393728..8393752 (25 bp)
GTCCAGTGCGCAGACACGGTTGATG
LOC_Os03g15380
Os.55672.1.S1_at--41--8171Chr03:8393787..8393811 (25 bp)
GGAAACATCGTGTCCCCAAGGGAAT
LOC_Os03g15380
Os.55672.1.S1_at--55--10791Chr03:8393878..8393902 (25 bp)
TTGATTGTGTGCATCATCGCTCTAG
LOC_Os03g15380
Os.55672.1.S1_at--488--531Chr03:8393893..8393917 (25 bp)
ATCGCTCTAGCGTATGTTGTATTTG
LOC_Os03g15380
Os.55672.1.S1_at--1059--2991Chr03:8393966..8393990 (25 bp)
AATGACGCACTTCTGAACCTTGAAA
LOC_Os03g15380
Target Sequence 
TACCCATAATTCCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCC
TTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAGAGAC
ATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAACGTGTACTACTGCAACACCAAGGA
GGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGC
GCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATAACAT
GTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCG
CTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACT
TCTGAACCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis