Browse Element(s) Details


Os.55725.1.S1_at

Description gb:AK108664.1
DB_XREF= gi:32993873
TID=Os.55725.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G02, full insert sequence.
FL= gb:AK108664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4121010/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41240NANA12+25539357..25540479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41250Os.19628.1.S1_a_at11/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41250OsAffx.8200.1.S1_at1/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55725.1.S1_at--875--571Chr12:25520518..25520542 (25 bp)
ATCCAGAGAGTCTTCATTCCAACAG
LOC_Os12g41210
Os.55725.1.S1_at--1044--2851Chr12:25520429..25520453 (25 bp)
AAGTGCGGCCGGAATCATGGCAGCT
LOC_Os12g41210
Os.55725.1.S1_at--181--851Chr12:25520413..25520437 (25 bp)
ATGGCAGCTCACTAGGAGGCCTACT
LOC_Os12g41210
Os.55725.1.S1_at--1019--831Chr12:25520368..25520392 (25 bp)
ATGGCACTACTTGAGGAGGCCCAGT
LOC_Os12g41210
Os.55725.1.S1_at--584--8191Chr12:25520320..25520344 (25 bp)
GGAAGGACATGCTGACCCCAAGTTT
LOC_Os12g41210
Os.55725.1.S1_at--1030--271Chr12:25520261..25520285 (25 bp)
ATAGGTACAGCATTCCGCGGTGCAT
LOC_Os12g41210
Os.55725.1.S1_at--520--1751Chr12:25520185..25520209 (25 bp)
ACCGGACGTCTTCTTGGATCCAAGC
LOC_Os12g41210
Os.55725.1.S1_at--1137--8031Chr12:25520155..25520179 (25 bp)
GGAGATTTTTCTTTCACTGACTGTA
LOC_Os12g41210
Os.55725.1.S1_at--498--3871Chr12:25520135..25520159 (25 bp)
CTGTAGATATTCGAACCATGTGGCT
LOC_Os12g41210
Os.55725.1.S1_at--926--6271Chr12:25519995..25520019 (25 bp)
GATGTATCTAGTCCTAACTTGGCAC
LOC_Os12g41210
Os.55725.1.S1_at--339--10531Chr12:25519942..25519966 (25 bp)
TTCATATGATCTTCAGGCTTCAGCT
NONE
Target Sequence 
ATCCAGAGAGTCTTCATTCCAACAGGAGACTTTAGTTGGCGTCGAAGTCCAGACTATGAATGGGCATCTATACCCAAAAC
CGCTTACCCAAGTGCGGCCGGAATCATGGCAGCTCACTAGGAGGCCTACTGAGGAAGTGCGAGGAGAGGCATGGCACTAC
TTGAGGAGGCCCAGTGAGGATGGAACATCCGATGTTACGGAAGGACATGCTGACCCCAAGTTTCAGAGAGACAATAAACA
GCTGGAAAACCATGTTGATAGGTACAGCATTCCGCGGTGCATCGAGGTGATGAACGCCATGGCAGACCTCTCGCCGATCG
AGAAGTCGCTCGCACCGGACGTCTTCTTGGATCCAAGCAATCGGGAGATTTTTCTTTCACTGACTGTAGATATTCGAACC
ATGTGGCTGAAGCGTAAGATGAAGAGCCTTGTGTAGAGATACCATGAAAATTTTTCATCCGCATAAAACCTGTCAAGCAT
GTGGTGTACTGTAGATATATCTAGTTTTCAAGAGTTCTGAACCGATGTATCTAGTCCTAACTTGGCACAGGCTATATTGC
AGCCAGCAACAATAAATTCATATGATCTTCAGGCTTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis