Browse Element(s) Details


Os.55776.1.S1_at

Description gb:AK108785.1
DB_XREF= gi:32993994
TID=Os.55776.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A12, full insert sequence.
FL= gb:AK108785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0687611/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55776.1.S1_at--42--31Chr01:3254538..3254562 (25 bp)
ATTGGCAGTCTGGTTCGAATCATTG
LOC_Os01g06876
Os.55776.1.S1_at--801--7171Chr01:3254545..3254569 (25 bp)
GTCTGGTTCGAATCATTGTGCCACA
LOC_Os01g06876
Os.55776.1.S1_at--196--7911Chr01:3254549..3254573 (25 bp)
GGTTCGAATCATTGTGCCACATAGA
LOC_Os01g06876
Os.55776.1.S1_at--1045--7271Chr01:3254562..3254586 (25 bp)
GTGCCACATAGAACGATGGAATCGC
LOC_Os01g06876
Os.55776.1.S1_at--1086--2371Chr01:3254590..3254614 (25 bp)
AAACGATGATTGTTAGTATACACTA
LOC_Os01g06876
Os.55776.1.S1_at--911--3312Chr01:3254610..3254634 (25 bp)
CACTATATGTATGGTGTTTATCCAC
LOC_Os01g06876
Os.55776.1.S1_at--920--7411Chr01:3254623..3254647 (25 bp)
GTGTTTATCCACCTACGGACATGAT
LOC_Os01g06876
Os.55776.1.S1_at--1093--6811Chr01:3254625..3254649 (25 bp)
GTTTATCCACCTACGGACATGATAT
LOC_Os01g06876
Os.55776.1.S1_at--377--6511Chr01:3254645..3254669 (25 bp)
GATATATGTGTATGTGTGTACTCGT
LOC_Os01g06876
Os.55776.1.S1_at--1015--6912Chr01:3254654..3254678 (25 bp)
GTATGTGTGTACTCGTAATTAGTGA
LOC_Os01g06876
Os.55776.1.S1_at--849--5211Chr01:3254679..3254703 (25 bp)
GAATTTAAATTCATTTTCTGTTGAT
LOC_Os01g06876
Target Sequence 
ATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATCGCAAAAAACGATGATTGTTAGTATACACTATAT
GTATGGTGTTTATCCACCTACGGACATGATATATGTGTATGTGTGTACTCGTAATTAGTGAGAATTTAAATTCATTTTCT
GTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis