Browse Element(s) Details


Os.55811.1.S1_at

Description gb:AK108836.1
DB_XREF= gi:32994045
TID=Os.55811.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-G10, full insert sequence.
FL= gb:AK108836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0418011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55811.1.S1_at--691--2011Chr02:1828619..1828638 (20 bp)
ACTACAGCCAGTTGCGGTACTCTGA
LOC_Os02g04180
Os.55811.1.S1_at--405--31Chr02:1828485..1828509 (25 bp)
ATTGGGTTCGTGTACTCGGTGCTCC
LOC_Os02g04180
Os.55811.1.S1_at--385--4791Chr02:1828465..1828489 (25 bp)
GCTCCAGTTCTTTGTGCTCGCAGAT
LOC_Os02g04180
Os.55811.1.S1_at--84--2471Chr02:1828428..1828452 (25 bp)
AACAAGCATTTGAATCCGCGGCGCA
LOC_Os02g04180
Os.55811.1.S1_at--467--9871Chr02:1828395..1828419 (25 bp)
TACTTCGACTTCTTCATGGATCAGG
LOC_Os02g04180
Os.55811.1.S1_at--676--8491Chr02:1827113..1827137 (25 bp)
TGGCATACCTTCTGATATCTTCGTC
LOC_Os02g04180
Os.55811.1.S1_at--117--8191Chr02:1827045..1827069 (25 bp)
GGAAGCGACCCTTTCCCGAAGATGG
LOC_Os02g04180
Os.55811.1.S1_at--1006--10831Chr02:1826985..1827009 (25 bp)
TTGGTTTTTGCTATCAGTGCCCTCA
LOC_Os02g04180
Os.55811.1.S1_at--591--9571Chr02:1826945..1826969 (25 bp)
TCTTCCGGCGAGATATTTAGCTGCT
LOC_Os02g04180
Os.55811.1.S1_at--225--1531Chr02:1826907..1826931 (25 bp)
AGCATGTTACCTTTTTCCTATCTTA
LOC_Os02g04180
Os.55811.1.S1_at--341--1391Chr02:1826883..1826907 (25 bp)
AGACTAAGTTTTTCGGTGCAGCCAT
LOC_Os02g04180
Target Sequence 
ACTACAGCCAGTTGCGGTACTCTGAGGCGGTGAACGTGATTGGGTTCGTGTACTCGGTGCTCCAGTTCTTTGTGCTCGCA
GATCTCATGAGGAGGAACAAGCATTTGAATCCGCGGCGCAAAGGAGATTACTTCGACTTCTTCATGGATCAGGTGCTGGC
ATACCTTCTGATATCTTCGTCGTNATCAGCAACTGCACGAGTAGGCGATTGGATCGACAACTGGGGAAGCGACCCTTTCC
CGAAGATGGCGAACAGCTCCATCGCCATTTCATTCATGGCATTCTTGGTTTTTGCTATCAGTGCCCTCATCTCTGCTTAC
AATCTCTTCCGGCGAGATATTTAGCTGCTCTTAGCAGCAACCAGCATGTTACCTTTTTCCTATCTTAGACTAAGTTTTTC
GGTGCAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis