Browse Element(s) Details


Os.5582.1.S2_a_at

Description gb:AK120061.1
DB_XREF= gi:37989684
TID=Os.5582.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I23, full insert sequence.
FL= gb:AK120061.1 gb:AK070714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0193011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01890Os.14407.1.S1_at11/118+540492..543049expressed protein
LOC_Os08g01900Os.27514.1.S1_at11/118+545227..550574U-box domain containing protein, expressed
LOC_Os08g01910Os.51228.2.A1_at1/118+551014..552278expressed protein
LOC_Os08g01920Os.52391.1.S1_x_at11/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01920Os.17052.2.S1_at1/118+554655..564962shoot gravitropism 2, putative, expressed
LOC_Os08g01930Os.5582.2.S1_x_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S2_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01930Os.5582.1.S1_a_at11/118+566509..571999KH domain containing protein, expressed
LOC_Os08g01940Os.19493.1.S1_at10/118+573933..580109expressed protein
LOC_Os08g01950Os.57091.1.S1_at10/118+588119..591691HCBT-like putative defense response protein, putative, expressed
LOC_Os08g01950OsAffx.16783.1.S1_x_at2/118+588119..591691HCBT-like putative defense response protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5582.1.S2_a_at--243--1011Chr08:571436..571460 (25 bp)
AGGATACGGTTCTACTCCGGCTAGT
LOC_Os08g01930
Os.5582.1.S2_a_at--1050--6991Chr08:571505..571529 (25 bp)
GTACGGTCAGCCAGGATACACTCAG
LOC_Os08g01930
Os.5582.1.S2_a_at--889--1711Chr08:571544..571568 (25 bp)
ACCAGCTTATGATCAGTCTGCCCAG
LOC_Os08g01930
Os.5582.1.S2_a_at--35--1591Chr08:571574..571598 (25 bp)
AGCTCAGAGTGGCTATGCTGCACCT
LOC_Os08g01930
Os.5582.1.S2_a_at--33--2971Chr08:571663..571687 (25 bp)
AATGGACCGCTTGAGGTTTGTACCT
LOC_Os08g01930
Os.5582.1.S2_a_at--604--5371Chr08:571713..571737 (25 bp)
GAAGACTATGTTTTGCCTCATGATG
LOC_Os08g01930
Os.5582.1.S2_a_at--652--711Chr08:571732..571756 (25 bp)
ATGATGCTGCCGCTTATATGAAGTA
LOC_Os08g01930
Os.5582.1.S2_a_at--851--5331Chr08:571751..571775 (25 bp)
GAAGTAGGCGGTTGAATCCCCTTGG
LOC_Os08g01930
Os.5582.1.S2_a_at--184--551Chr08:571766..571790 (25 bp)
ATCCCCTTGGGATGTTCATTCAGTA
LOC_Os08g01930
Os.5582.1.S2_a_at--783--10691Chr08:571831..571855 (25 bp)
TTGCCTCTCCAGTTGTTATACCGGA
LOC_Os08g01930
Os.5582.1.S2_a_at--613--6791Chr08:571930..571954 (25 bp)
GTTATTCTGCAGCATGTCGACTGAT
LOC_Os08g01930
Target Sequence 
AGGATACGGTTCTACTCCGGCTAGTGGCCAGGCTGGATATGCTGCTGCACCGGCTGCTGGCCAGCCAGGGTACGGTCAGC
CAGGATACACTCAGCCACCTACAAATCCACCAGCTTATGATCAGTCTGCCCAGCCACCAGCTCAGAGTGGCTATGCTGCA
CCTCCTGCAAACCCACAGCCTGCTGTTGCAAAGGGGGTGTCACCGCAGCCTGCTGGATATGGTGGACAATGGACCGCTTG
AGGTTTGTACCTCATTATTGACAGCAATGATCTAGTTGAAGACTATGTTTTGCCTCATGATGCTGCCGCTTATATGAAGT
AGGCGGTTGAATCCCCTTGGGATGTTCATTCAGTAAGCGGTAGACTTTTGATATGCCTATAAGGGATGTAACCCCTTGCC
TCTCCAGTTGTTATACCGGATCTCTGTAGTAGTTAGTAGTTTGTTAAGATGACATAAAACCTCCTGTTTAGTTTAAAAGT
GAACCGAATTATGTGTTATTCTGCAGCATGTCGACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5582.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis