Browse Element(s) Details


Os.55886.1.S1_at

Description gb:AK108944.1
DB_XREF= gi:32994153
TID=Os.55886.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B10, full insert sequence.
FL= gb:AK108944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5603010/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55886.1.S1_at--257--871Chr01:32586194..32586218 (25 bp)
AGGCCATGATAAGCGCCTACGACGA
LOC_Os01g56030
Os.55886.1.S1_at--984--10671Chr01:32586138..32586162 (25 bp)
TTCCACCGCATGATGAGCCAAGACT
LOC_Os01g56030
Os.55886.1.S1_at--1071--2751Chr01:32586119..32586143 (25 bp)
AAGACTAAGCTATAGCTCCGCCGTG
LOC_Os01g56030
Os.55886.1.S1_at--186--3351Chr01:32586056..32586080 (25 bp)
CACGAGGAAATTTGCCTCCGCGGGT
LOC_Os01g56030
Os.55886.1.S1_at--1081--6391Chr01:32586029..32586053 (25 bp)
GATCGTGTCTGTTCGTGTGTGTGCT
LOC_Os01g56030
Os.55886.1.S1_at--995--6791Chr01:32585942..32585966 (25 bp)
GTTTTGGTCGCGTGATCGTATCGAT
LOC_Os01g56030
Os.55886.1.S1_at--655--511Chr01:32585928..32585952 (25 bp)
ATCGTATCGATGTGCGTGCGTGCGT
LOC_Os01g56030
Os.55886.1.S1_at--1115--6991Chr01:32585871..32585895 (25 bp)
GTACGGTTGTCTGCTTCGATCGGTC
LOC_Os01g56030
Os.55886.1.S1_at--1149--491NONE
ATCGGTCGATCTATGTATGTGGTGC
NONE
Os.55886.1.S1_at--676--2591Chr01:32585825..32585849 (25 bp)
AACGCGGGACGCCTTAGCAATTTAG
LOC_Os01g56030
Os.55886.1.S1_at--202--10251Chr01:32585794..32585818 (25 bp)
TTTGTTTAACACGAAGCCAGCATGA
LOC_Os01g56030
Target Sequence 
AGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGAC
TAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCG
GGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGA
GATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGC
GTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGC
TTTGTTTAACACGAAGCCAGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis