Browse Element(s) Details


Os.55964.1.S1_at

Description gb:AK109061.1
DB_XREF= gi:32994270
TID=Os.55964.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F04, full insert sequence.
FL= gb:AK109061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0728010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07280Os.55964.1.S1_at10/115+3836189..3837276expressed protein
LOC_Os05g07290Os.27639.1.S1_x_at8/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290OsAffx.8980.1.S1_at6/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.53731.1.S1_at3/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07290Os.2987.3.S1_x_at1/115+3839426..3844772transposon protein, putative, unclassified
LOC_Os05g07300Os.17486.1.S1_at9/115+3856219..3859043D-mannose binding lectin family protein, expressed
LOC_Os05g07310OsAffx.13097.1.S1_s_at11/115+3861022..3868072transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55964.1.S1_at--425--9411Chr05:3836585..3836609 (25 bp)
TCGTCCGTGTCGATGTCGCCGGTGT
LOC_Os05g07280
Os.55964.1.S1_at--7--3971Chr05:3836566..3836590 (25 bp)
CGGTGTTCACCGTGCACCAGGCGTC
LOC_Os05g07280
Os.55964.1.S1_at--75--9631Chr05:3836398..3836422 (25 bp)
TCAGGAACGCGCTGTCGTCGGTCGT
LOC_Os05g07280
Os.55964.1.S1_at--372--8351Chr05:3836328..3836352 (25 bp)
GGCGGCGTATTAAATCCCTCCGCTG
LOC_Os05g07280
Os.55964.1.S1_at--907--6871Chr05:3836322..3836346 (25 bp)
GTATTAAATCCCTCCGCTGCACATG
LOC_Os05g07280
Os.55964.1.S1_at--349--9031Chr05:3836305..3836329 (25 bp)
TGCACATGCACGCTGGCCGCTAGTA
LOC_Os05g07280
Os.55964.1.S1_at--674--8411Chr05:3836291..3836315 (25 bp)
GGCCGCTAGTATGTACTGCTATCTA
LOC_Os05g07280
Os.55964.1.S1_at--784--4871Chr05:3836274..3836298 (25 bp)
GCTATCTAATTTGCGTTTTTTCCGG
LOC_Os05g07280
Os.55964.1.S1_at--405--3671Chr05:3836243..3836267 (25 bp)
CTTTGCATTTTGTACGCCATAGTAC
LOC_Os05g07280
Os.55964.1.S1_at--801--2071Chr05:3836216..3836240 (25 bp)
ACATGTACGTACTTACTCTACGTGA
LOC_Os05g07280
Os.55964.1.S1_at--888--7011NONE
GTACTTACTCTACGTGATAGTATGG
NONE
Target Sequence 
TCGTCCGTGTCGATGTCGCCGGTGTTCACCGTGCACCAGGCGTCCCCCATGGCGGTGGCGCGCTCCCACCACACGCGCGC
GTGCTCCGCCGGCGCCGCCTACGACGACGCCGCCGCGGCGAGGTGCTTCGGCATGGAGCGCGAGTGCGAGAGGGGGCTCG
TGAAAGGGTGCGGCGTCGCGGTGGCCGTCAGGAACGCGCTGTCGTCGGTCGTCGGCCACAAGTCCGGCGGCCACGGCGGC
GCGCCGCCGGCGGCGGCGGCGGCGTATTAAATCCCTCCGCTGCACATGCACGCTGGCCGCTAGTATGTACTGCTATCTAA
TTTGCGTTTTTTCCGGGGTGTTCTTTGCATTTTGTACGCCATAGTACAAACATGTACGTACTTACTCTACGTGATAGTAT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis