Browse Element(s) Details


Os.56023.1.S1_at

Description gb:AK109138.1
DB_XREF= gi:32994347
TID=Os.56023.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E06, full insert sequence.
FL= gb:AK109138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g038906/11serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56023.1.S1_at--63--2311Chr03:1753561..1753585 (25 bp)
AAAGGACTAACTGCAGGCTGCGTCG
LOC_Os03g03890
Os.56023.1.S1_at--359--9251Chr03:1753592..1753616 (25 bp)
TCCTCGCGATCGTTTTCACTTTTTT
LOC_Os03g03890
Os.56023.1.S1_at--572--10371Chr03:1753613..1753637 (25 bp)
TTTTTTCAGGCCATCTGTACGTGAA
LOC_Os03g03890
Os.56023.1.S1_at--607--8331Chr03:1753685..1753709 (25 bp)
GGCTGAGGGCTCACGACCTGAACCG
LOC_Os03g03890
Os.56023.1.S1_at--968--8411Chr03:1753709..1753733 (25 bp)
GGCCGAGCCACCAGCAGAATCTGGT
LOC_Os03g03890
Os.56023.1.S1_at--1079--7051Chr03:1754000..1754024 (25 bp)
GTAATCCTTATTCCAAGCCGCGATG
LOC_Os03g03890
Os.56023.1.S1_at--1075--1651Chr03:1754015..1754039 (25 bp)
AGCCGCGATGAGCTTTGGGATTATC
NONE
Os.56023.1.S1_at--880--8611Chr03:1754030..1754054 (25 bp)
TGGGATTATCTGCATACTAACATAG
NONE
Os.56023.1.S1_at--291--10572Chr06:18488906..18489348 (25 bp)
TTCTTTTTTCTTTCTACGGCGCGTG
NONE
Os.56023.1.S1_at--682--1931Chr03:1754102..1754126 (25 bp)
ACGGCGCGTGTCATCTTTAAACAAT
NONE
Os.56023.1.S1_at--757--5131Chr03:1754135..1754159 (25 bp)
GCAAATGATTATACTCCTCTGATCC
NONE
Target Sequence 
AAAGGACTAACTGCAGGCTGCGTCGTCGTCTTCCTCGCGATCGTTTTCACTTTTTTTTCAGGCCATCTGTACGTGAAGAG
TGACGTGTACTGCTTCGGCGTGGTGCTGCTTGAGCTGCTCACGGGGCTGAGGGCTCACGACCTGAACCGGCCGAGCCACC
AGCAGAATCTGGTGGAGTGGGCGCGGCCGTACATCGCCGGCGGCAAGAAGCTGGCGGGGCTGATGGACCCGCGGCTCGCC
GGGGACTACCCGGCCAAGGCGGCGGCGCGGGCCGCCAAGCTCGCCGACAAGTGCCTCTGCGGCGACCCCAAGAGCCGGCC
GTCCATGGACGACGTCGTCGTCGCGCTCCAGGAGATCGAGTCCGTCGGCACCGCGCGGCCGGCGGCGGCGAAGCTGCCGC
CGCGGGCGCCGCCGCCCGCTGCGCACCGGTCGCCGCACCGTAATCCTTATTCCAAGCCGCGATGAGCTTTGGGATTATCT
GCATACTAACATAGATTTGAAATTGAATTGAATTGAATTGTATTGATTCTTTTTTCTTTCTACGGCGCGTGTCATCTTTA
AACAATCTCACTTTGCAAATGATTATACTCCTCTGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis