Browse Element(s) Details


Os.56088.1.S1_at

Description gb:AK109240.1
DB_XREF= gi:32994449
TID=Os.56088.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F12, full insert sequence.
FL= gb:AK109240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3032011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56088.1.S1_at--521--3431Chr09:18455954..18455978 (25 bp)
CAGAGGATATCCCAGCCATGGCTGA
LOC_Os09g30320
Os.56088.1.S1_at--763--8331Chr09:18455973..18455997 (25 bp)
GGCTGAAATTAACTTGACGCATATC
LOC_Os09g30320
Os.56088.1.S1_at--406--4751Chr09:18456047..18456071 (25 bp)
GCTGATGCAGTAAACGTTGCCTGTT
LOC_Os09g30320
Os.56088.1.S1_at--137--6691Chr09:18456062..18456086 (25 bp)
GTTGCCTGTTTGAATTGGTCCTTGA
LOC_Os09g30320
Os.56088.1.S1_at--115--8611Chr09:18456077..18456101 (25 bp)
TGGTCCTTGATCAGGTGGTTCAACC
LOC_Os09g30320
Os.56088.1.S1_at--147--9231Chr09:18456215..18456239 (25 bp)
TCCACCATGGTGAATCCGTGAACTT
LOC_Os09g30320
Os.56088.1.S1_at--856--4631Chr09:18456309..18456333 (25 bp)
GCAGCTAGTAAATATTTCGCCGGTA
LOC_Os09g30320
Os.56088.1.S1_at--545--10191Chr09:18456321..18456345 (25 bp)
TATTTCGCCGGTAGGCTAAGGCCTG
LOC_Os09g30320
Os.56088.1.S1_at--373--4831Chr09:18456335..18456359 (25 bp)
GCTAAGGCCTGCGAAAGTCGTTGAT
LOC_Os09g30320
Os.56088.1.S1_at--635--10711Chr09:18456385..18456409 (25 bp)
TTGCGCAGACGGCATCCTTGTATCA
LOC_Os09g30320
Os.56088.1.S1_at--151--571Chr09:18456398..18456422 (25 bp)
ATCCTTGTATCACCCACTTGCAAAA
LOC_Os09g30320
Target Sequence 
CAGAGGATATCCCAGCCATGGCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGT
GCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTGGTTCAACCTGGCCGGCAGAT
GACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGC
CGGACGCCATCGTCGAGCTCCTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATT
AGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTAGGCTAAGGCCTGCGAAAGTC
GTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGACGGCATCCTTGTATCACCCACTTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis