Browse Element(s) Details


Os.56095.1.S1_at

Description gb:AK109250.1
DB_XREF= gi:32994459
TID=Os.56095.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H05, full insert sequence.
FL= gb:AK109250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2705011/11Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26990Os.27689.1.S1_at11/1110+13896705..13900487Kelch motif family protein, expressed
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009926biological_processauxin polar transport
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56095.1.S1_at--409--2591Chr10:13925082..13925106 (25 bp)
AACGTTCAGGTACGGTGGAGCTCTC
LOC_Os10g27050
Os.56095.1.S1_at--65--8551Chr10:13925097..13925121 (25 bp)
TGGAGCTCTCCTGCGATTATGCCAT
LOC_Os10g27050
Os.56095.1.S1_at--113--10151Chr10:13925114..13925138 (25 bp)
TATGCCATGCCCTGCAGTATGATGA
LOC_Os10g27050
Os.56095.1.S1_at--440--10231Chr10:13925162..13925186 (25 bp)
TATTGATTGCCGGTTGCTTCTGATA
LOC_Os10g27050
Os.56095.1.S1_at--845--7471Chr10:13925199..13925223 (25 bp)
GTGTGTGTGGCTCTAATCAGCCCGA
LOC_Os10g27050
Os.56095.1.S1_at--597--9671Chr10:13925215..13925239 (25 bp)
TCAGCCCGAGTAACACCAGCGATAT
LOC_Os10g27050
Os.56095.1.S1_at--279--6511Chr10:13925235..13925259 (25 bp)
GATATGGTGACTGTGCTGTTTGTAG
LOC_Os10g27050
Os.56095.1.S1_at--1020--4731Chr10:13925249..13925273 (25 bp)
GCTGTTTGTAGTTGGCATGCTCATT
LOC_Os10g27050
Os.56095.1.S1_at--185--8271Chr10:13925262..13925286 (25 bp)
GGCATGCTCATTTCAGTTTTTATTG
LOC_Os10g27050
Os.56095.1.S1_at--551--1331Chr10:13925289..13925313 (25 bp)
AGAGGATCTAGCTCGATATGGACAT
LOC_Os10g27050
Os.56095.1.S1_at--800--10391Chr10:13925328..13925352 (25 bp)
TTTTGCGGTATCATGCTTTTCCCAT
LOC_Os10g27050
Target Sequence 
AACGTTCAGGTACGGTGGAGCTCTCCTGCGATTATGCCATGCCCTGCAGTATGATGATGGTATGCGTGCTGGGCTGAAAG
TATTGATTGCCGGTTGCTTCTGATAAAAATGGTGACTGTGTGTGTGGCTCTAATCAGCCCGAGTAACACCAGCGATATGG
TGACTGTGCTGTTTGTAGTTGGCATGCTCATTTCAGTTTTTATTGTGAGAGGATCTAGCTCGATATGGACATGAAAAATA
ATGGTTTTTTGCGGTATCATGCTTTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis