Browse Element(s) Details


Os.56122.1.S1_at

Description gb:AK109292.1
DB_XREF= gi:32994501
TID=Os.56122.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C12, full insert sequence.
FL= gb:AK109292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2532011/11Initiation factor 2 subunit family protein, expressed
LOC_Os10g111401/11Phosphoglucomutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006413biological_processtranslational initiation
GO:0019252biological_processstarch biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0009570cellular_componentchloroplast stroma
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004614molecular_functionphosphoglucomutase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56122.1.S1_at--741--9431Chr10:12764899..12764923 (25 bp)
TCGGTGCGCCCCAAAGAAAATTCCA
LOC_Os10g25320
Os.56122.1.S1_at--203--3151Chr10:12764881..12764905 (25 bp)
AATTCCACCCTGTTTGAGGACTTGT
LOC_Os10g25320
Os.56122.1.S1_at--553--7411Chr10:12764858..12764882 (25 bp)
GTGATTGACTCCTGTGCTTATTATG
LOC_Os10g25320
Os.56122.1.S1_at--51--3871Chr10:12764821..12764845 (25 bp)
CTGATATATCTGTTGGCGTGGTTTA
LOC_Os10g25320
Os.56122.1.S1_at--46--4271Chr10:12764806..12764830 (25 bp)
GCGTGGTTTACCTTAATTCTGTAGA
LOC_Os10g25320
Os.56122.1.S1_at--164--7891Chr10:12764748..12764772 (25 bp)
GGTTCTAGTTAACTGAGGGCTTGCA
LOC_Os10g25320
Os.56122.1.S1_at--654--10352Chr10:12764666..12764690 (25 bp)
TTTATTGTCTATGTTTGGTCTCTCA
LOC_Os10g25320
Os.56122.1.S1_at--272--8591Chr10:12764651..12764675 (25 bp)
TGGTCTCTCAAACAGAAGTGGCAGT
LOC_Os10g25320
Os.56122.1.S1_at--85--6831Chr10:12764553..12764577 (25 bp)
GTTTACTAGCGCACTGTATTTCTTT
LOC_Os10g25320
Os.56122.1.S1_at--903--5571Chr10:12764519..12764543 (25 bp)
GAAATGTCTAGTCTGTCACTACCAA
LOC_Os10g25320
Os.56122.1.S1_at--443--2031Chr10:12764502..12764526 (25 bp)
ACTACCAATACCATGCACTGACTGT
LOC_Os10g25320
Target Sequence 
TCGGTGCGCCCCAAAGAAAATTCCACCCTGTTTGAGGACTTGTGATTGACTCCTGTGCTTATTATGATATTTCTGTTTCT
GATATATCTGTTGGCGTGGTTTACCTTAATTCTGTAGAATTATTGATGCTTGTTTTTGCTAGATAATGTATGGTTCTAGT
TAACTGAGGGCTTGCAGAATAGATGAATTTCCTCGGAAATAGAGTGCTTGAGCTTGAATTTGAGAGGTTTTGTTTTATTG
TCTATGTTTGGTCTCTCAAACAGAAGTGGCAGTCAAAATACTACTAGACAAGAACCATGTATTGGAATTGTACAACATTT
ATCTTGCAATATATCTTAAATTTTTAGTTTACTAGCGCACTGTATTTCTTTTCTACATGTGAAATGTCTAGTCTGTCACT
ACCAATACCATGCACTGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis