Browse Element(s) Details


Os.56152.1.S1_x_at

Description gb:AK109452.1
DB_XREF= gi:32994661
TID=Os.56152.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B09, full insert sequence.
FL= gb:AK109452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5150011/11Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os11g051001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56152.1.S1_x_at--794--4151Chr05:29451242..29451266 (25 bp)
CGCCGCCGATGGGTCGCAAGAAGAA
LOC_Os05g51500
Os.56152.1.S1_x_at--315--4051Chr05:29451236..29451260 (25 bp)
CGATGGGTCGCAAGAAGAACGTCGC
LOC_Os05g51500
Os.56152.1.S1_x_at--662--5371Chr05:29451223..29451247 (25 bp)
GAAGAACGTCGCCATCGATGACGAT
LOC_Os05g51500
Os.56152.1.S1_x_at--302--9391Chr05:29451209..29451233 (25 bp)
TCGATGACGATGAGTACTCCTTCCC
LOC_Os05g51500
Os.56152.1.S1_x_at--5--6311Chr05:29451201..29451225 (25 bp)
GATGAGTACTCCTTCCCGCAGGAGG
LOC_Os05g51500
Os.56152.1.S1_x_at--584--4511Chr05:29451156..29451180 (25 bp)
GCCGACAAGGACAAGCCCATCAAGA
LOC_Os05g51500
Os.56152.1.S1_x_at--562--976Chr12:3481069..3481088 (20 bp)
AGGAGCCCATCAACCTCGTCTTGAC
NONE
Os.56152.1.S1_x_at--907--9711Chr05:29451014..29451038 (25 bp)
TCAACCTCGTCTTGACCGGTAAGAA
LOC_Os05g51500
Os.56152.1.S1_x_at--625--4171Chr05:29450854..29450878 (25 bp)
CGCCAAATCAGACGCCGAGGACGAC
LOC_Os05g51500
Os.56152.1.S1_x_at--274--5792Chr11:2230632..2230658 (24 bp)
GACGACGACCTCGATTTCGACTTCA
LOC_Os11g05100
Os.56152.1.S1_x_at--292--4271Chr05:29450827..29450851 (25 bp)
CCTCGATTTCGACTTCAGCAAAGCC
LOC_Os05g51500
Target Sequence 
CGCCGCCGATGGGTCGCAAGAAGAACGTCGCCATCGATGACGATGAGTACTCCTTCCCGCAGGAGGACGCCGCCCCCGCC
CCCGCCGCCGACAAGGACAAGCCCATCAAGAAGGGCGGCGGCAAGAAGGGCAAGAAGGGCGCCAAGGCCGCCCTGCCCGA
CGACGACGACTACGAGCCCCCCGCGCCCCCGCCCCCGCCCGGGGACGACGACGACGACGAGGAGCCCATCAACCTCGTCT
TGACCGGTAAGAAGAAGAAGAAGAAGGGCGGCGGCGGCGCCGTGAGCTCCTTCAGCGCCTTCGACGCCCTCGCGGCCGAC
GAGGACCAGGGAGAAGACGACGACGAGGCCCCCGCCCCTGCCCCCGCCCCCGTCGAGCCCGATGCCGCCGCCAAATCAGA
CGCCGAGGACGACGACCTCGATTTCGACTTCAGCAAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56152.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis