Browse Element(s) Details


Os.56284.1.S1_at

Description gb:AK109766.1
DB_XREF= gi:32994975
TID=Os.56284.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H10, full insert sequence.
FL= gb:AK109766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5058011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56284.1.S1_at--316--4431Chr05:28918210..28918234 (25 bp)
GCCATGACGCGCTCGTGCATGTGGC
LOC_Os05g50580
Os.56284.1.S1_at--452--2891Chr05:28918314..28918338 (25 bp)
AAGGGATTATTCAGCGCGGGCACCG
LOC_Os05g50580
Os.56284.1.S1_at--1041--5071Chr05:28918333..28918357 (25 bp)
GCACCGTCTAGAACCTGAACATCAT
LOC_Os05g50580
Os.56284.1.S1_at--901--10351Chr05:28918444..28918468 (25 bp)
TTTTTTCACGAATATTCCGGATGCA
LOC_Os05g50580
Os.56284.1.S1_at--358--9411Chr05:28918489..28918513 (25 bp)
TCGTCGATCTCGTACAACCATTATA
LOC_Os05g50580
Os.56284.1.S1_at--386--7231Chr05:28918535..28918559 (25 bp)
GTCGCAGACGGTATCACGCCAGGAA
LOC_Os05g50580
Os.56284.1.S1_at--728--4151Chr05:28918570..28918594 (25 bp)
CGCGCGGGCGAAAGTCGTTGAAACA
LOC_Os05g50580
Os.56284.1.S1_at--561--3071Chr05:28918594..28918618 (25 bp)
AATCAGCGACAGTGTCAACCGGCTC
LOC_Os05g50580
Os.56284.1.S1_at--357--3251Chr05:28918609..28918633 (25 bp)
CAACCGGCTCCATTTATTTGGTGAT
LOC_Os05g50580
Os.56284.1.S1_at--1138--9671Chr05:28918711..28918735 (25 bp)
TCACTAATTGATTCGGTGGCAGTCA
LOC_Os05g50580
Os.56284.1.S1_at--331--7731Chr05:28918725..28918749 (25 bp)
GGTGGCAGTCAGGTATCGAAAAAAT
LOC_Os05g50580
Target Sequence 
GCCATGACGCGCTCGTGCATGTGGCCGTGTATGGTGCCGGGCACTTCGTGCCGTATTCTCAGGGGCGCGTGGCGCAGGAG
ATGATCGAGGATTGGGTGTTCAGAAAGGGATTATTCAGCGCGGGCACCGTCTAGAACCTGAACATCATTTCAAGGCATAT
ATAAGTAAATAAATAAATAATAAAGGGGCTAGCTATATTTGTGGAATTAGATTTGAAAATATACTTTTTATTTATTTTTT
CACGAATATTCCGGATGCAAAATTTTTGACGAAAATATATCGTCGATCTCGTACAACCATTATACGAAAATTACGTAAGC
GAGATGTCGCAGACGGTATCACGCCAGGAAAGTGCGAGACCGCGCGGGCGAAAGTCGTTGAAACAATCAGCGACAGTGTC
AACCGGCTCCATTTATTTGGTGATTAAGTACATAATTACTATTAACTAATAATAATTAGTGATTAATTAATAATTAATTA
ATCGCTAATTAGGATAGTTAATCACTAATTGATTCGGTGGCAGTCAGGTATCGAAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis