Browse Element(s) Details


Os.56291.1.S1_at

Description gb:AK109779.1
DB_XREF= gi:32994988
TID=Os.56291.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B11, full insert sequence.
FL= gb:AK109779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4000011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein
LOC_Os05g39990Os.50825.1.S1_s_at11/115+23412448..23414366Alpha-expansin 1 precursor, putative, expressed
LOC_Os05g40000Os.56291.1.S1_at11/115+23419461..23420987expressed protein
LOC_Os05g40000OsAffx.29576.3.S1_x_at11/115+23419461..23420987expressed protein
LOC_Os05g40010OsAffx.27248.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010OsAffx.27248.1.S1_x_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40010Os.16271.1.S1_s_at11/115+23424807..23426072Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g40020Os.57149.1.S1_at11/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40020Os.35921.2.S1_x_at1/115+23426977..23427864Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40030NANA5+23428589..23429032hypothetical protein
LOC_Os05g40040OsAffx.15034.1.S1_at11/115+23431884..23436764expressed protein
LOC_Os05g40050OsAffx.27250.2.S1_at11/115+23440881..23444049Leucine Rich Repeat family protein, expressed
LOC_Os05g40050OsAffx.22147.1.S1_x_at1/115+23440881..23444049Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56291.1.S1_at--185--8971Chr05:23419687..23419711 (25 bp)
TGAACGGTTTTTGCAAGTTGTGAAC
LOC_Os05g40000
Os.56291.1.S1_at--620--8631Chr05:23419589..23419613 (25 bp)
TGGGCTGGAATGATAGGCTTTGTCT
LOC_Os05g40000
Os.56291.1.S1_at--760--271Chr05:23419577..23419601 (25 bp)
ATAGGCTTTGTCTGACCAGGCCCGT
LOC_Os05g40000
Os.56291.1.S1_at--514--1731Chr05:23419563..23419587 (25 bp)
ACCAGGCCCGTCTATTGTGTATTTG
LOC_Os05g40000
Os.56291.1.S1_at--451--10231Chr05:23419551..23419575 (25 bp)
TATTGTGTATTTGGAGCGGCCCGAC
LOC_Os05g40000
Os.56291.1.S1_at--346--3991Chr05:23419536..23419560 (25 bp)
GCGGCCCGACTAACTTAAATTCTGG
LOC_Os05g40000
Os.56291.1.S1_at--117--4011Chr05:23419530..23419554 (25 bp)
CGACTAACTTAAATTCTGGGCTGGA
LOC_Os05g40000
Os.56291.1.S1_at--417--9471Chr05:23419516..23419540 (25 bp)
TCTGGGCTGGAATGGTTGGCAACTC
LOC_Os05g40000
Os.56291.1.S1_at--1094--6591Chr05:23419502..23419526 (25 bp)
GTTGGCAACTCATGTAAGAAACACT
LOC_Os05g40000
Os.56291.1.S1_at--179--2451Chr05:23419483..23419507 (25 bp)
AACACTGCGTGTATTTTCCCATTGG
LOC_Os05g40000
Os.56291.1.S1_at--752--6851Chr05:23419473..23419497 (25 bp)
GTATTTTCCCATTGGGACCACCTAT
LOC_Os05g40000
Target Sequence 
TGAACGGTTTTTGCAAGTTGTGAACGGTTTTTGCGGTTGGGGGACGATTTTGTAACTGGATGACAAGTTGAGGGACCTTC
GGTGTACTTTTTCCTTTTTGGGCTGGAATGATAGGCTTTGTCTGACCAGGCCCGTCTATTGTGTATTTGGAGCGGCCCGA
CTAACTTAAATTCTGGGCTGGAATGGTTGGCAACTCATGTAAGAAACACTGCGTGTATTTTCCCATTGGGACCACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis