Browse Element(s) Details


Os.56332.1.S1_at

Description gb:AK109870.1
DB_XREF= gi:32995079
TID=Os.56332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A10, full insert sequence.
FL= gb:AK109870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3398011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g277301/11hypothetical protein
LOC_Os01g707501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33920OsAffx.26317.1.S2_at9/114+20356070..20357087protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33930NANA4+20359790..20361089protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os04g33940OsAffx.14122.1.S1_at11/114+20361536..20362538expressed protein
LOC_Os04g33950Os.52509.1.S1_at11/114+20362600..20367754Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os04g33960OsAffx.3987.1.S1_at10/114+20369845..20371139hypothetical protein
LOC_Os04g33970OsAffx.14123.1.S1_at9/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.26986.1.A1_at7/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33970Os.46481.2.S1_x_at1/114+20372603..203761282-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os04g33980Os.56332.1.S1_at11/114+20380462..20383839transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g33990Os.49701.1.S1_at10/114+20391996..20393143Harpin-induced protein 1 containing protein, expressed
LOC_Os04g34000OsAffx.26318.1.S1_at11/114+20399726..20405837digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os04g34010Os.7467.1.S1_at11/114+20405435..20408753aluminum-activated malate transporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56332.1.S1_at--829--1731Chr04:20383263..20383287 (25 bp)
ACCATCGCTGGCAGGTGGGCGTCAA
LOC_Os04g33980
Os.56332.1.S1_at--905--411Chr04:20383355..20383379 (25 bp)
ATCATCCTGAGCTGCGAGAGCTTCG
LOC_Os04g33980
Os.56332.1.S1_at--750--3711Chr04:20383389..20383413 (25 bp)
CTAGAGCTGGCTCGCCGCTGATGAA
LOC_Os04g33980
Os.56332.1.S1_at--120--9593Chr07:16175788..16175825 (24 bp)
TCTTGCTTCGATTTGAACCTTGACA
LOC_Os07g27730
Os.56332.1.S1_at--786--3231Chr04:20383532..20383556 (25 bp)
CAAGCAGCAGATGAGCTCAGCTCCG
LOC_Os04g33980
Os.56332.1.S1_at--877--1591Chr04:20383550..20383574 (25 bp)
AGCTCCGGTGATGTCTGTCTGCTCA
LOC_Os04g33980
Os.56332.1.S1_at--586--5311Chr04:20383635..20383659 (25 bp)
GAAGGATCCATGTTTATCAGCTAGG
LOC_Os04g33980
Os.56332.1.S1_at--406--3711Chr04:20383655..20383679 (25 bp)
CTAGGGTAGCTAGCTCATTGCTCGT
LOC_Os04g33980
Os.56332.1.S1_at--944--1571Chr04:20383666..20383690 (25 bp)
AGCTCATTGCTCGTCTAATTAGATT
LOC_Os04g33980
Os.56332.1.S1_at--450--411Chr04:20383750..20383774 (25 bp)
ATCATGGCATTGGTGCGGTTGGACA
LOC_Os04g33980
Os.56332.1.S1_at--618--8071Chr04:20383802..20383826 (25 bp)
GGAGCTCTGTTATATATTTGTGGTG
LOC_Os04g33980
Target Sequence 
ACCATCGCTGGCAGGTGGGCGTCAAGGAGGCCATCGACAGAGGGGTTCTCCGGAGCCAGGCCGGCGACGAGGTCGGCGTG
GGCGACGCCATCATCATCCTGAGCTGCGAGAGCTTCGAGGCGAGGTCTAGAGCTGGCTCGCCGCTGATGAACAAGAAGAT
GAAGGTGGAGAAAGAGGAAGCCAACACAAGTGATCATGATCACAAATTAGAAATCGAATCAGGCGCCCCCTCTTCTTGCT
TCGATTTGAACCTTGACATGGAGAGCGATCAAGCAGCAGATGAGCTCAGCTCCGGTGATGTCTGTCTGCTCACGGCGGTC
GACCGGGTGCTGCTCTTCAGAAGGCAGGATGAAATGTAACACTAGTGTACATGAAGGATCCATGTTTATCAGCTAGGGTA
GCTAGCTCATTGCTCGTCTAATTAGATTTTCCTTTCATTTGTTTTGATGGTTTTTTTTGTTTCTAGTATTAACTTTGGCT
TTAGAGGATCATGGCATTGGTGCGGTTGGACAATGGCATATTATGAGCTTCGTTAAGATGGAGCTCTGTTATATATTTGT
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis