Browse Element(s) Details


Os.56488.1.S1_at

Description gb:AK110075.1
DB_XREF= gi:32995284
TID=Os.56488.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-F03, full insert sequence.
FL= gb:AK110075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4563011/11Leucine Rich Repeat family protein, expressed
LOC_Os04g452001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45580NANA6+27597586..27598313Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g45590Os.19152.1.S1_at10/116+27600127..27604339Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os06g45600OsAffx.15940.1.S1_at11/116+27607479..27608273hypothetical protein
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein
LOC_Os06g45630Os.56488.1.S1_at11/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45630OsAffx.2759.1.S1_x_at1/116+27621773..27625273Leucine Rich Repeat family protein, expressed
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009706cellular_componentchloroplast inner membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56488.1.S1_at--1053--4631Chr06:27624759..27624783 (25 bp)
GCGTTCCCGGACAACATCGAGGAGA
LOC_Os06g45630
Os.56488.1.S1_at--580--971Chr06:27624778..27624802 (25 bp)
AGGAGATCCTCGACGTGGCCCTGCT
LOC_Os06g45630
Os.56488.1.S1_at--100--7111Chr06:27624870..27624894 (25 bp)
GTCACGGTGCGCGATTGCTTGGCAT
LOC_Os06g45630
Os.56488.1.S1_at--1000--10731Chr06:27624888..27624912 (25 bp)
TTGGCATCCGCCATTAGGGTCGGGC
LOC_Os06g45630
Os.56488.1.S1_at--117--5911Chr06:27624928..27624952 (25 bp)
GAGCTCCCTACGAGAGGATGGCCAT
LOC_Os06g45630
Os.56488.1.S1_at--373--6031Chr06:27624969..27624993 (25 bp)
GAGATGCGCCTCATCAGAGACGCTT
LOC_Os06g45630
Os.56488.1.S1_at--813--3632Chr06:27624991..27625015 (25 bp)
CTTGCCTTCGTGCTTGTGGTAAATA
LOC_Os06g45630
Os.56488.1.S1_at--690--3131Chr06:27625073..27625097 (25 bp)
AATTATTACTACGTCATCGGCATCG
LOC_Os06g45630
Os.56488.1.S1_at--417--491Chr06:27625088..27625112 (25 bp)
ATCGGCATCGAATTCTATCACTATT
LOC_Os06g45630
Os.56488.1.S1_at--918--91Chr06:27625099..27625123 (25 bp)
ATTCTATCACTATTCGAGGCTTCGA
LOC_Os06g45630
Os.56488.1.S1_at--480--5911Chr06:27625176..27625200 (25 bp)
GAGCTCTGATCTCTTGATTTATCTA
LOC_Os06g45630
Target Sequence 
GCGTTCCCGGACAACATCGAGGAGATCCTCGACGTGGCCCTGCTGCTGCAGGCCGAGGAGCTCGACGGAGCAGCGTCGTC
GACGACGTCGGAGGAGGAGAGCGAGGCGCGCGTCACGGTGCGCGATTGCTTGGCATCCGCCATTAGGGTCGGGCTCAGCT
GCTCCCGGCGAGCTCCCTACGAGAGGATGGCCATGAGCGTCGCCGCCGACGAGATGCGCCTCATCAGAGACGCTTGCCTT
CGTGCTTGTGGTAAATAAGTAGGACAGTATACTGATTGTTTGTAGAACTTTGACAGCCGAATTAGTCGATGGATAATTAT
TACTACGTCATCGGCATCGAATTCTATCACTATTCGAGGCTTCGAGCAAGCTGTTGTGGAGTAAAAAAAATGAAAATGTA
AAATCCATGGAATTCAGGAGCTCTGATCTCTTGATTTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis