Browse Element(s) Details


Os.56907.1.S1_at

Description gb:AK110565.1
DB_XREF= gi:32995774
TID=Os.56907.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D04, full insert sequence.
FL= gb:AK110565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g275109/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56907.1.S1_at--459--871Chr09:16717939..16717963 (25 bp)
AGGCCCAAGGCCTACAAAATTTGAT
LOC_Os09g27510
Os.56907.1.S1_at--791--2191Chr09:16717926..16717950 (25 bp)
ACAAAATTTGATGGGCCTGAATACC
LOC_Os09g27510
Os.56907.1.S1_at--752--5231Chr09:16717908..16717932 (25 bp)
GAATACCGGCCCATCTATATGAGTG
LOC_Os09g27510
Os.56907.1.S1_at--212--8351NONE
GGCTGGAATTTAGGCCCATCCGAAC
NONE
Os.56907.1.S1_at--1066--91Chr09:16717857..16717881 (25 bp)
AGGCCGTTAGGGTATTTCATTTCTG
LOC_Os09g27510
Os.56907.1.S1_at--647--191Chr09:16717844..16717868 (25 bp)
ATTTCATTTCTGTTCATCTATCGTG
LOC_Os09g27510
Os.56907.1.S1_at--931--10031Chr09:16717808..16717832 (25 bp)
TAGTTTCCTTTGTTAGTCGATCGTT
LOC_Os09g27510
Os.56907.1.S1_at--326--6391Chr09:16717790..16717814 (25 bp)
GATCGTTTATGTCTGTTCGGTATTT
LOC_Os09g27510
Os.56907.1.S1_at--523--8791Chr09:16717731..16717755 (25 bp)
TGTTCATGTAAACGAGCCGGCCTGC
LOC_Os09g27510
Os.56907.1.S1_at--207--1991NONE
ACTCCTCCCGAACTGAAAATCATTG
NONE
Os.56907.1.S1_at--611--9531Chr09:16717658..16717682 (25 bp)
TCATTGGTTGTTGACTACTACTAAT
LOC_Os09g27510
Target Sequence 
AGGCCCAAGGCCTACAAAATTTGATGGGCCTGAATACCGGCCCATCTATATGAGTGGGCTGGAATTTAGGCCCATCCGAA
CAAGGCCGTTAGGGTATTTCATTTCTGTTCATCTATCGTGTTTATATTTGTTAGTTTCCTTTGTTAGTCGATCGTTTATG
TCTGTTCGGTATTTTAGGATGGATAATGATATCAACCAAGGTGTAAAATGTTCATGTAAACGAGCCGGCCTGCCAGCCCA
CTGCCCACAACCCATGAGCCCAACTCCTCCCGAACTGAAAATCATTGGTTGTTGACTACTACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis