Browse Element(s) Details


Os.56943.1.S1_at

Description gb:AK110611.1
DB_XREF= gi:32995820
TID=Os.56943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H04, full insert sequence.
FL= gb:AK110611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0133011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56943.1.S1_at--383--8271Chr08:204647..204671 (25 bp)
GGCATCGTCGACTGGAACCTGCTCA
LOC_Os08g01330
Os.56943.1.S1_at--595--5131Chr08:204553..204577 (25 bp)
GCAACAACATTTCTTCGTCAGGCTT
LOC_Os08g01330
Os.56943.1.S1_at--435--9631Chr08:204536..204560 (25 bp)
TCAGGCTTCATCGATGACCGAGACT
LOC_Os08g01330
Os.56943.1.S1_at--664--6551Chr08:204400..204424 (25 bp)
GATTACTCCGTCTCCATGATGTATA
LOC_Os08g01330
Os.56943.1.S1_at--701--9751Chr08:204372..204396 (25 bp)
TAATTTGACCACTGGCCATCATCAG
LOC_Os08g01330
Os.56943.1.S1_at--1089--871Chr08:204349..204373 (25 bp)
AGGCCATCTGCATGCTTACTATCTA
LOC_Os08g01330
Os.56943.1.S1_at--570--7011Chr08:204314..204338 (25 bp)
GTACACGGTTGTTAGTTCATTCTTA
LOC_Os08g01330
Os.56943.1.S1_at--511--7431Chr08:204264..204288 (25 bp)
GTGTATCTATCGGTTGTTCGTCTTT
LOC_Os08g01330
Os.56943.1.S1_at--130--9411Chr08:204247..204271 (25 bp)
TCGTCTTTTGACCTCATTGCTGAGA
LOC_Os08g01330
Os.56943.1.S1_at--55--7171Chr08:204110..204134 (25 bp)
GTCTGCTTAATGTGTACACCACCTC
LOC_Os08g01330
Os.56943.1.S1_at--739--3371Chr08:204094..204118 (25 bp)
CACCACCTCTCTGCAGTATATATAG
LOC_Os08g01330
Target Sequence 
GGCATCGTCGACTGGAACCTGCTCACCAGCTTGCTGCCGCCGCCGGCGCATCAGCTCTTCCACCACCTGCCTTCCGCTTC
TAGCTCCAAGAACAGCAACAACATTTCTTCGTCAGGCTTCATCGATGACCGAGACTGATCGATCGATCCAGATCGATTAT
TATCAATTGACAATTCATTCATCATATATATGCATGAATTCTTACAAATACGCACAATTAAACGATCGAGTGTACTATTA
ATTAGTTGATTACTCCGTCTCCATGATGTATACATTAATTTGACCACTGGCCATCATCAGGCCATCTGCATGCTTACTAT
CTAGCTTATGTCAGTACACGGTTGTTAGTTCATTCTTAATTAATTAGCTACTAGTGTCAGTGTGTGTATCTATCGGTTGT
TCGTCTTTTGACCTCATTGCTGAGAGAGGTTTGTAACTGATGATGATTAAGTTAGCTAGCATTTAATTAGGTGCTATATA
TACACATATATATGCACTATCACTATATACATCATATATATGTATACATATATCGTTGTCTGCTTAATGTGTACACCACC
TCTCTGCAGTATATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis