Browse Element(s) Details


Os.56954.1.S1_at

Description gb:AK110627.1
DB_XREF= gi:32995836
TID=Os.56954.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B04, full insert sequence.
FL= gb:AK110627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4212010/11heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42030Os.14919.1.S1_at4/115+24518779..24521724hypothetical protein
LOC_Os05g42030OsAffx.29313.1.S1_at1/115+24518779..24521724hypothetical protein
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein
LOC_Os05g42100Os.17764.1.S1_at10/115+24540121..24541414expressed protein
LOC_Os05g42110NANA5+24543296..24543595hypothetical protein
LOC_Os05g42120Os.56954.1.S1_at10/115+24544014..24545955heat shock protein, putative, expressed
LOC_Os05g42130Os.53020.1.S1_at11/115+24547965..24549508GRAS family transcription factor containing protein, expressed
LOC_Os05g42140OsAffx.15067.1.S1_at11/115+24549853..24550554expressed protein
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os05g42160NANA5+24564203..24564565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56954.1.S1_at--591--7911Chr05:24545490..24545514 (25 bp)
GGTTGCTCGAGATCAAGGTGCCCAA
LOC_Os05g42120
Os.56954.1.S1_at--720--9331Chr05:24545575..24545599 (25 bp)
TCGCCGCGCGATTGGAGAGAGCAAA
LOC_Os05g42120
Os.56954.1.S1_at--116--5951Chr05:24545593..24545617 (25 bp)
GAGCAAATTATTCTTCTTCTGAGTT
LOC_Os05g42120
Os.56954.1.S1_at--152--10611Chr05:24545609..24545633 (25 bp)
TTCTGAGTTCTGACAGTGACGGTGA
LOC_Os05g42120
Os.56954.1.S1_at--939--6431Chr05:24545695..24545719 (25 bp)
GATCATCTCACACATGTTGCATATG
LOC_Os05g42120
Os.56954.1.S1_at--632--9051Chr05:24545718..24545742 (25 bp)
TGCATTAACGTCCAATCCATGTGCC
LOC_Os05g42120
Os.56954.1.S1_at--615--771Chr05:24545736..24545760 (25 bp)
ATGTGCCTGCAGATGATTTGTACTA
LOC_Os05g42120
Os.56954.1.S1_at--746--6991Chr05:24545761..24545785 (25 bp)
GTACTAATGTGTTAGCTTACCGTTA
LOC_Os05g42120
Os.56954.1.S1_at--736--4971Chr05:24545804..24545828 (25 bp)
GCATCGTGCATATGCATCAGCATCA
LOC_Os05g42120
Os.56954.1.S1_at--615--2151Chr05:24545834..24545858 (25 bp)
ACAGCATCGCTGTCGAATTGGTCGA
LOC_Os05g42120
Os.56954.1.S1_at--621--331NONE
ATACATATCTAGGAGGGTGCTTTGA
NONE
Target Sequence 
GGTTGCTCGAGATCAAGGTGCCCAAGTCCGGCGACGCCCACCAAGCGGCGGCCGCCACCGCCTGAGAATCCTAACCTCGC
CGGCGTCGCCGCGCGATTGGAGAGAGCAAATTATTCTTCTTCTGAGTTCTGACAGTGACGGTGAAGATGGCACAAAACTT
GATAAGAATTTCTCAAAGATATGGAGGGACCAAAAAGTGAGCAAAGATCATCTCACACATGTTGCATATGCATTAACGTC
CAATCCATGTGCCTGCAGATGATTTGTACTAGTACTAATGTGTTAGCTTACCGTTAAAAATGGATCATTAATTAGCATCG
TGCATATGCATCAGCATCACAGTCACAGCATCGCTGTCGAATTGGTCGACGATAAAATGGGTCATCGAGATCATAAATTC
GATTCCGGAATACATGAACATATATACATATCTAGGAGGGTGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis