Browse Element(s) Details


Os.56956.1.S1_at

Description gb:AK110629.1
DB_XREF= gi:32995838
TID=Os.56956.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B07, full insert sequence.
FL= gb:AK110629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0133011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01300Os.9231.1.S1_at11/114+217398..220560rhomboid protein, putative, expressed
LOC_Os04g01310Os.53673.1.S1_at10/114+231089..233845D-mannose binding lectin family protein, expressed
LOC_Os04g01320Os.54385.1.S1_at10/114+237075..239769D-mannose binding lectin family protein, expressed
LOC_Os04g01330Os.56956.1.S1_at11/114+241000..241928expressed protein
LOC_Os04g01340OsAffx.10458.1.S1_at7/114+242538..245183retrotransposon protein, putative, LINE subclass
LOC_Os04g01354Os.53952.1.S1_at11/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.32197.1.A1_x_at5/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01354OsAffx.7027.1.S1_at3/114+249358..253546Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g01370OsAffx.11259.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.22850.1.S1_x_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.20615.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified
LOC_Os04g01370OsAffx.30486.1.S1_at1/114+263221..268013retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56956.1.S1_at--680--10391Chr04:241712..241736 (25 bp)
TTTTCCTGGGATGATTTTCGCTGGC
LOC_Os04g01330
Os.56956.1.S1_at--490--4151Chr04:241747..241771 (25 bp)
CGCGCTTGCGAAAATGGTTTAATTT
LOC_Os04g01330
Os.56956.1.S1_at--600--2971Chr04:241759..241783 (25 bp)
AATGGTTTAATTTCACAGTCGAGAT
LOC_Os04g01330
Os.56956.1.S1_at--947--174Chr12:20746921..20746944 (24 bp)
ATTTCACAGTCGAGATGGTAGCGGC
NONE
Os.56956.1.S1_at--674--2131Chr04:241773..241797 (25 bp)
ACAGTCGAGATGGTAGCGGCGATCC
LOC_Os04g01330
Os.56956.1.S1_at--314--811Chr04:241782..241806 (25 bp)
ATGGTAGCGGCGATCCTCTTCCCCT
LOC_Os04g01330
Os.56956.1.S1_at--110--9551Chr04:241798..241822 (25 bp)
TCTTCCCCTCCTGTGAAAATGGTTT
LOC_Os04g01330
Os.56956.1.S1_at--309--8977Chr12:25123349..25123372 (24 bp)
TGAAAATGGTTTTGGGCCGCCTGGA
NONE
Os.56956.1.S1_at--506--6371Chr04:241857..241881 (25 bp)
GATCCATTCCATCTGATGACAGGAA
LOC_Os04g01330
Os.56956.1.S1_at--679--3671Chr04:241896..241920 (25 bp)
CTTTTCTCCATATATCGGGTCTATT
LOC_Os04g01330
Os.56956.1.S1_at--1076--3571Chr04:241904..241928 (25 bp)
CATATATCGGGTCTATTACTGTGTG
LOC_Os04g01330
Target Sequence 
TTTTCCTGGGATGATTTTCGCTGGCGGGCCACGGGCGCGCTTGCGAAAATGGTTTAATTTCACAGTCGAGATGGTAGCGG
CGATCCTCTTCCCCTCCTGTGAAAATGGTTTTGGGCCGCCTGGAAAAATCTTTTTTTCTAGTAGTGATCCATTCCATCTG
ATGACAGGAAAACAAAGTTAGGTACTTTTCTCCATATATCGGGTCTATTACTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis