Browse Element(s) Details


Os.57.1.S1_at

Description gb:NM_187865.1
DB_XREF= gi:34902813
TID=Os.57.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g148805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57.1.S1_at--554--9111Chr01:8336183..8336207 (25 bp)
TGCTGCGAGCAATCGTCATCGGCGT
LOC_Os01g14880
Os.57.1.S1_at--266--1331Chr01:8336102..8336126 (25 bp)
AGAGGTCTTGTTCGAAGCATCCGGC
LOC_Os01g14880
Os.57.1.S1_at--231--10571Chr01:8336058..8336082 (25 bp)
TTCTTCTCCGACAACGATGTGGAGG
LOC_Os01g14880
Os.57.1.S1_at--540--2751Chr01:8336033..8336057 (25 bp)
AAGAACGGTGGCTGGTCTCATGCCT
LOC_Os01g14880
Os.57.1.S1_at--151--6111Chr01:8335997..8336021 (25 bp)
GAGTCGATCGCCAGGCAGCTTGGAT
LOC_Os01g14880
Os.57.1.S1_at--69--5071Chr01:8335983..8336007 (25 bp)
GCAGCTTGGATGCAAACGATCTGAT
NONE
Os.57.1.S1_at--54--10111Chr01:8335952..8335976 (25 bp)
TATCCAGACAAGCATATTTTTCAGG
NONE
Os.57.1.S1_at--339--4251Chr01:8335914..8335938 (25 bp)
CCGTGTGCTTGCCTATCGAATGGAG
NONE
Os.57.1.S1_at--1040--1251Chr01:8335891..8335915 (25 bp)
AGATTTGCTGGACCTTCCCTATTAA
NONE
Os.57.1.S1_at--695--10493Chr11:4417629..4417653 (25 bp)
TTAACGTGCGGAGTGCTTTCTTTGG
NONE
Os.57.1.S1_at--861--9054Chr11:4417642..4417666 (25 bp)
TGCTTTCTTTGGGACTTCCTTCAAG
NONE
Target Sequence 
TGCTGCGAGCAATCGTCATCGGCGTCGACGTCGAGGTAGAGGCAGCTCGTTCAGCGGCGCGAGGGAGGCGGCGGAGGAGG
CGGAGAGGTCTTGTTCGAAGCATCCGGCGATGCCCCGGCGATGCGGCTTCTTCTCCGACAACGATGTGGAGGAAGAACGG
TGGCTGGTCTCATGCCTGCGGTGGCCTGGAGTCGATCGCCAGGCAGCTTGGATGCAAACGATCTGATCAAACTTATCCAG
ACAAGCATATTTTTCAGGATAATATATATAGCCGTGTGCTTGCCTATCGAATGGAGATTTGCTGGACCTTCCCTATTAAT
NTNNNNCNGTNNNNNANAANNNTTAACGTGCGGAGTGCTTTCTTTGGGACTTCCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis