Browse Element(s) Details


Os.57022.1.S1_at

Description gb:AK110757.1
DB_XREF= gi:32995966
TID=Os.57022.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H02, full insert sequence.
FL= gb:AK110757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2574011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25760Os.27034.1.A1_at5/117+14798099..14803594transposon protein, putative, Mutator sub-class
LOC_Os07g25760OsAffx.5441.1.S1_at4/117+14798099..14803594transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57022.1.S1_at--927--3431Chr07:14773222..14773246 (25 bp)
CAGATCTTCATGCATTAGCCCTGAT
LOC_Os07g25740
Os.57022.1.S1_at--362--1671Chr07:14773206..14773230 (25 bp)
AGCCCTGATTCTGCTAACATAGATC
LOC_Os07g25740
Os.57022.1.S1_at--420--391Chr07:14773184..14773208 (25 bp)
ATCACTGTTGGGATGGATCTGCTAA
LOC_Os07g25740
Os.57022.1.S1_at--507--10271Chr07:14773156..14773180 (25 bp)
TTTGCTGACACCACGAGATGTTCTT
LOC_Os07g25740
Os.57022.1.S1_at--806--7251Chr07:14773098..14773122 (25 bp)
GTCCAGTAACGACACCACGAGACTA
LOC_Os07g25740
Os.57022.1.S1_at--76--5991Chr07:14773080..14773104 (25 bp)
GAGACTAGGGTTCATCACGGGACAC
LOC_Os07g25740
Os.57022.1.S1_at--414--7631Chr07:14773062..14773086 (25 bp)
GGGACACCACGAGGCAGACGCATTC
LOC_Os07g25740
Os.57022.1.S1_at--568--1391Chr07:14773047..14773071 (25 bp)
AGACGCATTCCTCTGTTTGCTGAAT
LOC_Os07g25740
Os.57022.1.S1_at--1027--3411Chr07:14773015..14773039 (25 bp)
CAGAGCAGGCGCGTGATTTATTTAT
LOC_Os07g25740
Os.57022.1.S1_at--860--10371Chr07:14772978..14773002 (25 bp)
TTTTACTTAATCCTTTTGTGCTCTT
LOC_Os07g25740
Os.57022.1.S1_at--761--8891Chr07:14772932..14772956 (25 bp)
TGAGATGGATATCTGCCTATTTTTT
LOC_Os07g25740
Target Sequence 
CAGATCTTCATGCATTAGCCCTGATTCTGCTAACATAGATCACTGTTGGGATGGATCTGCTAACATTTTGCTGACACCAC
GAGATGTTCTTGAGGTTAACTGATAACATTTTATGTGTAACTATGTCCAGTAACGACACCACGAGACTAGGGTTCATCAC
GGGACACCACGAGGCAGACGCATTCCTCTGTTTGCTGAATGTAGCAGCAGAGCAGGCGCGTGATTTATTTATGTTTCTTT
TTCTTTTTACTTAATCCTTTTGTGCTCTTGCTGCTGGGGGAGGCCTTAATTGAGATGGATATCTGCCTATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis