Browse Element(s) Details


Os.57049.1.S1_at

Description gb:AK110812.1
DB_XREF= gi:32996021
TID=Os.57049.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F06, full insert sequence.
FL= gb:AK110812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3369011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57049.1.S1_at--326--3131Chr07:20128609..20128633 (25 bp)
AATTTCTCATGTGCCATACGTTCGG
LOC_Os07g33690
Os.57049.1.S1_at--175--2251Chr07:20128407..20128431 (25 bp)
AAATTCACATTAACTGCTCCGGCTT
LOC_Os07g33690
Os.57049.1.S1_at--143--4271Chr07:20128389..20128413 (25 bp)
CCGGCTTCTGTCACATATCTGGATA
LOC_Os07g33690
Os.57049.1.S1_at--658--1251Chr07:20128353..20128377 (25 bp)
AGATTGTCAGCGATCTGCTCAAAGA
LOC_Os07g33690
Os.57049.1.S1_at--619--6111Chr07:20128275..20128299 (25 bp)
GAGTGCTCTGATTATTTTCTGATGT
LOC_Os07g33690
Os.57049.1.S1_at--294--2631Chr07:20128234..20128258 (25 bp)
AAGCCAATTTTTCATCGTTTTCCAG
LOC_Os07g33690
Os.57049.1.S1_at--202--10531Chr07:20128224..20128248 (25 bp)
TTCATCGTTTTCCAGTGCAGACTAA
LOC_Os07g33690
Os.57049.1.S1_at--785--10731Chr07:20128079..20128103 (25 bp)
TTGCAGATACCATCAGACGCACTAT
LOC_Os07g33690
Os.57049.1.S1_at--632--1971Chr07:20128030..20128054 (25 bp)
ACTGAATTCGCACATCACACTGAGC
LOC_Os07g33690
Os.57049.1.S1_at--819--1971Chr07:20128012..20128036 (25 bp)
ACTGAGCGTTGTGTGTTGTCTGGTA
LOC_Os07g33690
Os.57049.1.S1_at--208--3891Chr07:20127993..20128017 (25 bp)
CTGGTAGATTGCTAGTCTCTGGTAT
LOC_Os07g33690
Target Sequence 
AATTTCTCATGTGCCATACGTTCGGATAAATGGCAGAACTATCCAGATGATTTCACATGTTCTTGGAAGTTAGCAACACA
TGTATAACAAGGTTACTCTAGGTTAAGTTATGTGTAGGCATTTTGTGGGATATCATTGTTGGTACTTCATCGGTAGGAAT
TAGGAGTTTCTGAAAACTTCAAAGGTATGGTTTCAAAAAACCAAATTCACATTAACTGCTCCGGCTTCTGTCACATATCT
GGATATACAAGCCACTAGATTGTCAGCGATCTGCTCAAAGAGGGAAATGAACCAATCAAAAACTAGGAAGTAGCCATTTT
TTAAAAAAAATGAAGAGTGCTCTGATTATTTTCTGATGTTTTCACGTTTCAACAGAAGCCAATTTTTCATCGTTTTCCAG
TGCAGACTAAGATTGGTATTCGGAGCGATGCAGAATTGCAGATACCATCAGACGCACTATGACTGTATACTAATATACTG
TACTACTGAATTCGCACATCACACTGAGCGTTGTGTGTTGTCTGGTAGATTGCTAGTCTCTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis