Browse Element(s) Details


Os.57153.1.S1_at

Description gb:AK111036.1
DB_XREF= gi:32996245
TID=Os.57153.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A08, full insert sequence.
FL= gb:AK111036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4973011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57153.1.S1_at--226--9971Chr01:28899556..28899580 (25 bp)
TAGCCCAATTATACCCCTGTTAAAT
LOC_Os01g49730
Os.57153.1.S1_at--236--3171Chr01:28899561..28899585 (25 bp)
CAATTATACCCCTGTTAAATCAACG
LOC_Os01g49730
Os.57153.1.S1_at--409--8592Chr04:25481697..25481738 (25 bp)
TGGTACTTCCTTAAGGATGGGAAAG
NONE
Os.57153.1.S1_at--529--8151Chr01:28899644..28899668 (25 bp)
GGAAAGATGCTCTAAACCTATTTCT
LOC_Os01g49730
Os.57153.1.S1_at--999--9071Chr01:28899651..28899675 (25 bp)
TGCTCTAAACCTATTTCTATCTCTC
LOC_Os01g49730
Os.57153.1.S1_at--422--7391Chr01:28899687..28899711 (25 bp)
GTGAGAGCGTTTTATCCAGCTCCAT
LOC_Os01g49730
Os.57153.1.S1_at--271--10372Chr09:20998831..20999172 (25 bp)
TTTTATCCAGCTCCATTCCTATTTT
NONE
Os.57153.1.S1_at--1086--9212Chr01:28899701..28899725 (25 bp)
TCCAGCTCCATTCCTATTTTGGATG
LOC_Os01g49730
Os.57153.1.S1_at--993--10651Chr01:28899711..28899735 (25 bp)
TTCCTATTTTGGATGAGCTGAAACT
LOC_Os01g49730
Os.57153.1.S1_at--1051--2511Chr01:28899732..28899756 (25 bp)
AACTATTTAGCTGACCTCCAACTCT
LOC_Os01g49730
Os.57153.1.S1_at--300--10451Chr01:28899738..28899762 (25 bp)
TTAGCTGACCTCCAACTCTAAGAGA
LOC_Os01g49730
Target Sequence 
TAGCCCAATTATACCCCTGTTAAATCAACGGTTAGATTAGATTGGTACCTCATGTTACCTCGTACCTCATGGTACTTCCT
TAAGGATGGGAAAGATGCTCTAAACCTATTTCTATCTCTCTAGTTTATTTTGTGAGAGCGTTTTATCCAGCTCCATTCCT
ATTTTGGATGAGCTGAAACTATTTAGCTGACCTCCAACTCTAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis