Browse Element(s) Details


Os.57160.1.S1_at

Description gb:AK111045.1
DB_XREF= gi:32996254
TID=Os.57160.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B11, full insert sequence.
FL= gb:AK111045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g472403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47200Os.11393.1.S2_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47200Os.11393.1.S1_at11/116+28616449..28619312Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g47210Os.54309.1.S1_at11/116+28619995..28627008Peptidase family M3 containing protein, expressed
LOC_Os06g47220OsAffx.5134.1.S1_at10/116+28628473..28630394expressed protein
LOC_Os06g47220OsAffx.30891.1.S1_x_at2/116+28628473..28630394expressed protein
LOC_Os06g47230Os.12237.1.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47230Os.12237.2.S1_a_at11/116+28638397..28640586expressed protein
LOC_Os06g47240Os.57160.1.S1_at3/116+28641657..28641960hypothetical protein
LOC_Os06g47250OsAffx.15968.1.S1_at11/116+28643142..28647822expressed protein
LOC_Os06g47260OsAffx.15969.1.S1_at11/116+28650190..28651600Ras-related protein RHN1, putative, expressed
LOC_Os06g47270Os.50815.1.S1_at11/116+28651795..28653125Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g47280OsAffx.28146.1.S1_at11/116+28653840..28655981hypothetical protein
LOC_Os06g47290Os.24780.1.A1_a_at11/116+28657267..28661112Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57160.1.S1_at--740--5511Chr06:28641616..28641640 (25 bp)
GAAAATCATCGTAAACCGCCATCTC
NONE
Os.57160.1.S1_at--900--3771Chr06:28641681..28641705 (25 bp)
CTCTGCCTGCATATGTGTTCAATCT
LOC_Os06g47240
Os.57160.1.S1_at--143--671Chr06:28641735..28641759 (25 bp)
ATGAATGTTGCAGTCGCTGCTGCCG
LOC_Os06g47240
Os.57160.1.S1_at--26--7391Chr06:28641905..28641929 (25 bp)
GTGACCACAACTTCATCGCGCATTT
LOC_Os06g47240
Os.57160.1.S1_at--1055--1291Chr06:28641994..28642018 (25 bp)
AGATGCATAGCACCGGTATTGATGA
NONE
Os.57160.1.S1_at--817--471Chr06:28642030..28642054 (25 bp)
ATCTGCATTTGCGATTTGGGCTCCA
NONE
Os.57160.1.S1_at--1118--5751Chr06:28642070..28642094 (25 bp)
GACGTTCTCCGTGGCTTTGATAATT
NONE
Os.57160.1.S1_at--8--9051Chr06:28642119..28642143 (25 bp)
TGCAGCGATTTGAGCACCATTTCTT
NONE
Os.57160.1.S1_at--839--10271Chr06:28642142..28642166 (25 bp)
TTTGCACCCTGATATCTGTTCATGT
NONE
Os.57160.1.S1_at--613--9211Chr06:28642166..28642190 (25 bp)
TCCAACATATGTCGACTGCCAATCA
NONE
Os.57160.1.S1_at--1035--3071Chr06:28642186..28642210 (25 bp)
AATCACTCAGTAGTACTCCCTCTTT
NONE
Target Sequence 
GAAAATCATCGTAAACCGCCATCTCCATCATCATCTCGCGCATGGTGAGATTACTGCTGCTACTCCTCTGCCTGCATATG
TGTTCAATCTCTGTTGCAATGTAGTGTTGATATATGAATATGAATGTTGCAGTCGCTGCTGCCGTTGTTGCTGCGGCCCG
TGGTGCGCGCCGCGGCGAGCGTGGCGAGGCGGCCGGCGTCTGCGGTGGCGACGGTGCTGCACCGCGCCGGCGCGCTCCCG
AGGAACCGGGGGCTGGAGCGCCTCGTCAGGGACGACATGCTCGTCGGGGGTGACCACAACTTCATCGCGCATTTCGTCGT
CGGCTTCATGCGCTGCCTGTGTTAGCTGGAGTACATAGCTAGGCGGCTAAGCTAGATTAGATGCATAGCACCGGTATTGA
TGAATTGATATCTGATCTGCATTTGCGATTTGGGCTCCATTTTTGGGGGGATACGACGTTCTCCGTGGCTTTGATAATTA
AAACAGCTAGTGTAGCATGCATTTGCAGCGATTTGAGCACCATTTCTTTGCACCCTGATATCTGTTCATGTCCAACATAT
GTCGACTGCCAATCACTCAGTAGTACTCCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis