Browse Element(s) Details


Os.57214.1.S1_at

Description gb:AK111147.1
DB_XREF= gi:32996356
TID=Os.57214.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E09, full insert sequence.
FL= gb:AK111147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3697011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36930NANA8+23229962..23235958retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.5.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.2.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36950OsAffx.25952.1.S1_s_at1/118+23243195..23244703expressed protein
LOC_Os08g36960OsAffx.32149.4.S1_at11/118+23248961..23250595F-box domain containing protein, expressed
LOC_Os08g36970Os.57214.1.S1_at11/118+23251865..23252868expressed protein
LOC_Os08g36970Os.49767.1.S1_x_at1/118+23251865..23252868expressed protein
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57214.1.S1_at--170--10631Chr08:23252412..23252436 (25 bp)
TTCGCGTCGTCCTTGTCCAATAATC
LOC_Os08g36970
Os.57214.1.S1_at--597--8012Chr08:23252339..23252363 (25 bp)
GGAGGCGGCACTCGTTCATCATCTC
LOC_Os08g36970
Os.57214.1.S1_at--555--8551Chr08:23252159..23252183 (25 bp)
TGGAGGAGCTGCACAGCGCCGTCCA
LOC_Os08g36970
Os.57214.1.S1_at--284--1811Chr08:23252055..23252079 (25 bp)
ACGCCGACCGGTGTAAATGCTGACG
LOC_Os08g36970
Os.57214.1.S1_at--852--7331Chr08:23252020..23252044 (25 bp)
GTGTACGTCTTCTCGTGCGTCGTAA
LOC_Os08g36970
Os.57214.1.S1_at--735--4651Chr08:23252004..23252028 (25 bp)
GCGTCGTAACTGCACCAATGTAATG
LOC_Os08g36970
Os.57214.1.S1_at--481--751Chr08:23251987..23252011 (25 bp)
ATGTAATGTACCTGTTCGTGTTCTC
LOC_Os08g36970
Os.57214.1.S1_at--1019--3851Chr08:23251976..23252000 (25 bp)
CTGTTCGTGTTCTCGGTTCGATCTA
LOC_Os08g36970
Os.57214.1.S1_at--708--6711Chr08:23251961..23251985 (25 bp)
GTTCGATCTATTTCCTGTGCGTAAG
LOC_Os08g36970
Os.57214.1.S1_at--79--10671Chr08:23251950..23251974 (25 bp)
TTCCTGTGCGTAAGTTAATGGCGAC
LOC_Os08g36970
Os.57214.1.S1_at--540--10051Chr08:23251870..23251894 (25 bp)
TAGTTATCGATCAATCGGCCGATTG
LOC_Os08g36970
Target Sequence 
TTCGCGTCGTCCTTGTCCAATAATCGCCGCCGTGGCGGCGGGGATCAGAGCGGGAGGAGGACGGAGCTGCGGCGGAGGCG
GCACTCGTTCATCATCTCCGGCCTTCGTCGCGGCGCCGCCGCCGCCGCTGCCGCCCCGTCGAAGCGTCACGAGGGGAGCT
GGCTGTTCTCGGCGCCCGCGTCGCTGCGCGGGTCGCCGGTGGCCAGCGGGCACCTGTCGGTGAAGGTGTCGACGTCGTCG
GAGGAGAGCACGATGGAGGAGCTGCACAGCGCCGTCCAGGCCGCCATCGCGCACTGCAAGAACTCCATCGCCGCCGCCGC
GCCAAGCAGCAGGCCGGCGGCGGCGGCGGCGGCGACCACGCCGACCGGTGTAAATGCTGACGCGGTGGTGGCGTGTACGT
CTTCTCGTGCGTCGTAACTGCACCAATGTAATGTACCTGTTCGTGTTCTCGGTTCGATCTATTTCCTGTGCGTAAGTTAA
TGGCGACAATTAATATTAGTCCGAAAATACGAGTGTATTGTTGACTAATTAATTTGAAATGTTAGTTATCGATCAATCGG
CCGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis