Browse Element(s) Details


OsAffx.32149.4.S1_at

Description tigr:9636.m03713
TID=OsAffx.32149.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3696011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36930NANA8+23229962..23235958retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.5.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36940Os.31312.2.S1_x_at4/118+23236727..23239982retrotransposon protein, putative, unclassified
LOC_Os08g36950OsAffx.25952.1.S1_s_at1/118+23243195..23244703expressed protein
LOC_Os08g36960OsAffx.32149.4.S1_at11/118+23248961..23250595F-box domain containing protein, expressed
LOC_Os08g36970Os.57214.1.S1_at11/118+23251865..23252868expressed protein
LOC_Os08g36970Os.49767.1.S1_x_at1/118+23251865..23252868expressed protein
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32149.4.S1_at--1022--4791Chr08:23250018..23250042 (25 bp)
GCTCGCACGCCAAATCGGATCTCAT
LOC_Os08g36960
OsAffx.32149.4.S1_at--998--5771Chr08:23250086..23250110 (25 bp)
GACGAGACACGCTACGCCATATGGC
LOC_Os08g36960
OsAffx.32149.4.S1_at--892--3571Chr08:23250103..23250127 (25 bp)
CATATGGCTGCTCATGGGCGATCGC
LOC_Os08g36960
OsAffx.32149.4.S1_at--126--9151Chr08:23250143..23250167 (25 bp)
TGCGCGTTCCGCAATGACTACTTGT
LOC_Os08g36960
OsAffx.32149.4.S1_at--1000--5171Chr08:23250153..23250177 (25 bp)
GCAATGACTACTTGTCGTCGGCGGC
LOC_Os08g36960
OsAffx.32149.4.S1_at--456--8251Chr08:23250203..23250227 (25 bp)
GGCAGCGGGCTGCTTATTTTATTGC
LOC_Os08g36960
OsAffx.32149.4.S1_at--376--10411Chr08:23250216..23250240 (25 bp)
TTATTTTATTGCAGTCCGGCGACGA
LOC_Os08g36960
OsAffx.32149.4.S1_at--162--8391Chr08:23250233..23250257 (25 bp)
GGCGACGAAATCTCCATCGTTATAC
LOC_Os08g36960
OsAffx.32149.4.S1_at--1029--751Chr08:23250264..23250288 (25 bp)
ATGTGACGCAGGAGGTGTCCCACTT
LOC_Os08g36960
OsAffx.32149.4.S1_at--192--8051Chr08:23250517..23250541 (25 bp)
GGAGTTCTTGGTCCGCATAATGCAG
LOC_Os08g36960
OsAffx.32149.4.S1_at--934--351Chr08:23250533..23250557 (25 bp)
ATAATGCAGAAGCTCCCCAGCCTGT
LOC_Os08g36960
Target Sequence 
GCTCGCACGCCAAATCGGATCTCATGGAGATGTCCGGACGCGTGTGCGTCGCGACAGCCGACGGCGGCGACGAGACACGC
TACGCCATATGGCTGCTCATGGGCGATCGCCGGTGGGAGCGGCGGTGCGCGTTCCGCAATGACTACTTGTCGTCGGCGGC
GAAGGTCGCCGGCGTCTGGGACTGTGGCAGCGGGCTGCTTATTTTATTGCAGTCCGGCGACGAAATCTCCATCGTTATAC
ACGACGATGTGACGCAGGAGGTGTCCCACTTGGACGCGCCGCCGAACGCGTCGCCGGAGGAGGAGTCGGACTACCGGATC
TGTTGGGGTTACAAGCCGACGCTCGTGTCTCCGGCGAGCATCATCGGCGACGGCGAGCTCAGCCAGCACGAGCAGCAGCG
CCGTGACCTGGCGGCCTATGTGCTCGCCGCCCTGAAGCCCGCGAAGGAGCTGGACAGGCGAATGGGGCAGCACGCCGCGC
TGCGCACCGTCTGCTTCATGGAGTTCTTGGTCCGCATAATGCAGAAGCTCCCCAGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32149.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis