Browse Element(s) Details


Os.57218.1.S1_at

Description gb:AK111151.1
DB_XREF= gi:32996360
TID=Os.57218.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-F04, full insert sequence.
FL= gb:AK111151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3360011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33580Os.55404.1.S1_at6/115+19656771..19657448expressed protein
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57218.1.S1_at--721--2571Chr05:19675123..19675147 (25 bp)
AACGTGTCATTAATCGTGATGCTTA
LOC_Os05g33600
Os.57218.1.S1_at--4--731Chr05:19675092..19675116 (25 bp)
ATGTTGGCAACTTATCGATCTCGAT
LOC_Os05g33600
Os.57218.1.S1_at--724--131Chr05:19675065..19675089 (25 bp)
ATTACAATGGACTAGATTCTCAAAC
LOC_Os05g33600
Os.57218.1.S1_at--144--10031Chr05:19675031..19675055 (25 bp)
TATGTAATTATGTCAGCCTTGCTAA
LOC_Os05g33600
Os.57218.1.S1_at--693--8731Chr05:19675021..19675045 (25 bp)
TGTCAGCCTTGCTAAAATGTTCATT
LOC_Os05g33600
Os.57218.1.S1_at--1151--10091Chr05:19674968..19674992 (25 bp)
TATGTGAACTCAGCTACTCTCCAAG
LOC_Os05g33600
Os.57218.1.S1_at--32--9911Chr05:19674954..19674978 (25 bp)
TACTCTCCAAGGCTAGGATCCTGTA
LOC_Os05g33600
Os.57218.1.S1_at--980--10071Chr05:19674941..19674965 (25 bp)
TAGGATCCTGTATAGAACTGCCAAA
LOC_Os05g33600
Os.57218.1.S1_at--668--4391Chr05:19674922..19674946 (25 bp)
GCCAAATTTGCTTTCTAACTTCTTT
LOC_Os05g33600
Os.57218.1.S1_at--1060--9791Chr05:19674907..19674931 (25 bp)
TAACTTCTTTCTACAATTCTACTAA
LOC_Os05g33600
Os.57218.1.S1_at--431--8511Chr05:19674849..19674873 (25 bp)
TGGAATGGAATTTATCCCTTTCTTT
LOC_Os05g33600
Target Sequence 
AACGTGTCATTAATCGTGATGCTTATACATCATGTTGGCAACTTATCGATCTCGATAAATTACAATGGACTAGATTCTCA
AACATAAGTCCATATGTAATTATGTCAGCCTTGCTAAAATGTTCATTACTCATTTCTTATATGTAAGTTGTGTCATATGT
GAACTCAGCTACTCTCCAAGGCTAGGATCCTGTATAGAACTGCCAAATTTGCTTTCTAACTTCTTTCTACAATTCTACTA
ACTTTGATCTAAATTTCTATGGATGTATTTACAATGGAATGGAATTTATCCCTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis