Browse Element(s) Details


Os.5725.1.S1_at

Description gb:BI810367
DB_XREF= gi:15857555
DB_XREF=J006C01
CLONE=J006C01
TID=Os.5725.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5725 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568049.1 (A.thaliana) putative fructose-bisphosphate aldolase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g072101/11Fructose-bisphosphate aldolase class-I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07160Os.24613.1.S1_at11/1112+3513880..3520715Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os12g07170OsAffx.24099.1.S1_x_at1/1112+3522302..3524423transposon protein, putative, Pong sub-class
LOC_Os12g07180Os.26430.1.A1_at9/1112+3524545..3526563expressed protein
LOC_Os12g07190Os.21230.1.S1_at11/1112+3530358..3535425CBS domain-containing protein, putative, expressed
LOC_Os12g07200NANA12+3537613..3538138hypothetical protein
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5725.1.S1_at--374--10631Chr12:3543442..3543466 (25 bp)
TTCGTCAAGAACTACACCTACTGAA
LOC_Os12g07210
Os.5725.1.S1_at--321--10391Chr12:3543472..3543496 (25 bp)
TTTTCGACTGAAAAACTCTGAACAT
NONE
Os.5725.1.S1_at--573--10451Chr12:3543572..3543596 (25 bp)
TTAGCACATCGAGAGAATGCATCAT
NONE
Os.5725.1.S1_at--776--5391Chr12:3543632..3543656 (25 bp)
GAAGCTTATCTGAAAACTCCGAAGA
NONE
Os.5725.1.S1_at--535--471Chr12:3543669..3543693 (25 bp)
ATCTGCTTAGACATATGGACATCGA
NONE
Os.5725.1.S1_at--344--10331Chr12:3543752..3543776 (25 bp)
TTTCATTAGATGCTTGGCTCCTCCC
NONE
Os.5725.1.S1_at--107--8331Chr12:3543767..3543791 (25 bp)
GGCTCCTCCCATCTGTACAAGGATG
NONE
Os.5725.1.S1_at--1135--7971Chr12:3543787..3543811 (25 bp)
GGATGCTTTGGTAGATTTGTCGTAA
NONE
Os.5725.1.S1_at--924--10231Chr12:3543802..3543826 (25 bp)
TTTGTCGTAAGGTTTTGTAATGATC
NONE
Os.5725.1.S1_at--407--8851Chr12:3543822..3543846 (25 bp)
TGATCTACGGATTTGCATGGTTGCT
NONE
Os.5725.1.S1_at--980--1811Chr12:3543874..3543898 (25 bp)
ACGCTTGAACGTCGATATGTAATAA
NONE
Target Sequence 
TTCGTCAAGAACTACACCTACTGAAAATAATTTTCGACTGAAAAACTCTGAACATACATATATATTAGTAAGTNACNTTG
NCGAGAATTAGGATCNACAAGAAGCTTNCTCTGAAAACTCTGNAACATGTATATATTAGCACATCGAGAGAATGCATCAT
GGTTACTGTATTTTACANAGGTTTTNTAGATCACANAGAAGCTTATCTGAAAACTCCGAAGATAGATGCTNCCANATCTG
CTTAGACATATGGACATCGAGAGGATGCATCATGGTTGCTGTATTTTACAANNGTTTTTCTAGATCTTTGTTTTTTTGGT
TTCATTAGATGCTTGGCTCCTCCCATCTGTACAAGGATGCTTTGGTAGATTTGTCGTAAGGTTTTGTAATGATCTACGGA
TTTGCATGGTTGCTNCAAAATTTTGCATGTATATATACNCGACGCTTGAACGTCGATATGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis