Browse Element(s) Details


Os.5734.1.S1_at

Description gb:AK109193.1
DB_XREF= gi:32994402
TID=Os.5734.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B06, full insert sequence.
FL= gb:AK102125.1 gb:AK109193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1520411/11UPF0071 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15220NANA8+9207003..9211450retrotransposon protein, putative, unclassified
LOC_Os08g15230Os.11652.1.S1_at11/118+9217863..9221767heat shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5734.1.S1_at--180--2911Chr08:9194257..9194281 (25 bp)
AAGGATTGTTGTTCTCCCAACTCTT
LOC_Os08g15204
Os.5734.1.S1_at--33--1011Chr08:9194441..9194465 (25 bp)
AGGATCTGGAGGAACGTCTAGCGAA
LOC_Os08g15204
Os.5734.1.S1_at--759--1631Chr08:9194460..9194484 (25 bp)
AGCGAAAGCTCAAGTGATCTTCCTT
LOC_Os08g15204
Os.5734.1.S1_at--846--8531Chr08:9194487..9194511 (25 bp)
TGGAGAAGGGCCTGCACATGCATCC
LOC_Os08g15204
Os.5734.1.S1_at--229--5411Chr08:9194528..9194552 (25 bp)
GAAGCGTTCGGCAATCAGATACTGG
LOC_Os08g15204
Os.5734.1.S1_at--785--1951Chr08:9194548..9194572 (25 bp)
ACTGGCAACTCATCGGACTCTGAAT
LOC_Os08g15204
Os.5734.1.S1_at--610--6771Chr08:9194579..9194603 (25 bp)
GTTACTGCTTCTGAACTTATGCTAA
LOC_Os08g15204
Os.5734.1.S1_at--1123--10391Chr08:9194610..9194634 (25 bp)
TTATTGGCTGTTACGGCAAACGGTT
LOC_Os08g15204
Os.5734.1.S1_at--701--8231Chr08:9194624..9194648 (25 bp)
GGCAAACGGTTATGTTATCCCTATT
LOC_Os08g15204
Os.5734.1.S1_at--212--391Chr08:9194730..9194754 (25 bp)
ATCACATGTTGTTACGGCTTTGCTT
LOC_Os08g15204
Os.5734.1.S1_at--511--2191Chr08:9194811..9194835 (25 bp)
ACAAATTCATGCTTCCCTGGTAGAT
LOC_Os08g15204
Target Sequence 
AAGGATTGTTGTTCTCCCAACTCTTGCATTGGTAAAGAACACCAAAGTTGAGGATTATGTGGTTGGGTTTGATGAGCTTG
GTGGTAAAGATGATTTCAGCACTGAGGATCTGGAGGAACGTCTAGCGAAAGCTCAAGTGATCTTCCTTGATGGAGAAGGG
CCTGCACATGCATCCAAGCAGGCAACCAAACGAAGCGTTCGGCAATCAGATACTGGCAACTCATCGGACTCTGAATAGTT
TTGTTACTGCTTCTGAACTTATGCTAAATGTTTTTATTGGCTGTTACGGCAAACGGTTATGTTATCCCTATTAGTAATAG
GAAAAGTTAATTAGTCTAGCATTGAACATTTGAACTGGGACTTGGGAGTTAAAAGAGGTATCTAGAGTGACACATCACAT
GTTGTTACGGCTTTGCTTGGAGTTGTTGTATATTATGATGTTTATGATAGTTTNCCTTGTTTGTTTGAGTGCAAACAAAT
TCATGCTTCCCTGGTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis