Browse Element(s) Details


Os.57355.1.S1_x_at

Description gb:AK111361.1
DB_XREF= gi:32996570
TID=Os.57355.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H06, full insert sequence.
FL= gb:AK111361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5855011/11methyladenine glycosylase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58560Os.20602.2.S1_x_at11/111+34173699..34175879hAT family dimerisation domain containing protein
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003824molecular_functioncatalytic activity
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57355.1.S1_x_at--950--6991Chr01:34167246..34167270 (25 bp)
GTACGTATCACTTGGTGCGTGTCTT
LOC_Os01g58550
Os.57355.1.S1_x_at--1002--3751Chr01:34167279..34167303 (25 bp)
CTCTTTCCTTCATGTCTCGAGATAG
LOC_Os01g58550
Os.57355.1.S1_x_at--179--3051Chr01:34167341..34167365 (25 bp)
AATCCCCAGTGCATGTGGCTTGATT
LOC_Os01g58550
Os.57355.1.S1_x_at--1006--271Chr01:34167379..34167403 (25 bp)
ATAGGCTCACAGTCACACAGGCAGG
LOC_Os01g58550
Os.57355.1.S1_x_at--366--2431Chr01:34167470..34167494 (25 bp)
AAAAGCCTGCGCATGTGACACTGCA
LOC_Os01g58550
Os.57355.1.S1_x_at--736--651Chr01:34167645..34167669 (25 bp)
ATGCACCATGCGCTGTATCATAGGA
LOC_Os01g58550
Os.57355.1.S1_x_at--764--271Chr01:34167664..34167688 (25 bp)
ATAGGATTTTCATCTCCGTTCCATC
LOC_Os01g58550
Os.57355.1.S1_x_at--1067--5891Chr01:34167691..34167715 (25 bp)
GAGCTCGCGACGACCAAGCTGGAAA
LOC_Os01g58550
Os.57355.1.S1_x_at--106--1711Chr01:34167703..34167727 (25 bp)
ACCAAGCTGGAAATACGGCATCTAT
LOC_Os01g58550
Os.57355.1.S1_x_at--608--3931Chr01:34167718..34167742 (25 bp)
CGGCATCTATAAACGTCACCAAAAT
LOC_Os01g58550
Os.57355.1.S1_x_at--914--2951Chr01:34167740..34167764 (25 bp)
AATGTACCGGCCAGCAGGGTGGATC
LOC_Os01g58550
Target Sequence 
GTACGTATCACTTGGTGCGTGTCTTTCTTTTTTCTCTTTCCTTCATGTCTCGAGATAGAGATAGGGTGACGATCATTAGC
GGGGTGGGCTACCCCAATCCCCAGTGCATGTGGCTTGATTAAAGCGGGATGAGATAGGCTCACAGTCACACAGGCAGGCA
AGCAAGCAGGGTCAGGCCATGTGCTGCCGGCAAGCGCATGTGTAGGTGAGAGAGGGAGGGGAAGAAAAGCCTGCGCATGT
GACACTGCAGCTCTTGCCCTCGCTAGCTCGTCCGTCCACCCGTCCGCGCTGTGCGCGCAGATGGGCGGACGCAGCGACGG
ACCCAGCCAGTGCACCATCCGGGCCACCGCGACACGCAAACACCTCCGGGCAGCCATGTCCACCGGGCCATTACTCCGCA
TGCACCATGCGCTGTATCATAGGATTTTCATCTCCGTTCCATCACGAGCTCGCGACGACCAAGCTGGAAATACGGCATCT
ATAAACGTCACCAAAATGTACCGGCCAGCAGGGTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57355.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis