Browse Element(s) Details


Os.57382.1.S1_at

Description gb:AK111416.1
DB_XREF= gi:32996625
TID=Os.57382.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G03, full insert sequence.
FL= gb:AK111416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4355011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43520Os.652.1.S2_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.652.1.S1_a_at11/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.23622.1.A1_at9/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.10728.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43520Os.55119.1.S1_at1/111+25240399..25250864ceramidase family protein, putative, expressed
LOC_Os01g43530NANA1+25259750..25260416Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57382.1.S1_at--138--9591Chr01:25272509..25272533 (25 bp)
TCTTGGGTCCCATGGATGACGACGT
LOC_Os01g43550
Os.57382.1.S1_at--345--1231Chr01:25272479..25272503 (25 bp)
AGTTCGACCATGTCTTGGAGGACGA
LOC_Os01g43550
Os.57382.1.S1_at--276--5751Chr01:25272440..25272464 (25 bp)
GACGGCTCTCGCTATAGCTGCAAGA
LOC_Os01g43550
Os.57382.1.S1_at--812--7011Chr01:25272407..25272431 (25 bp)
GTACTAGCTAGCTTTGACGAGCCTT
LOC_Os01g43550
Os.57382.1.S1_at--503--5651Chr01:25272378..25272402 (25 bp)
GACAGTTGACTGTCAGCTCCAACCT
LOC_Os01g43550
Os.57382.1.S1_at--661--2631Chr01:25272358..25272382 (25 bp)
AACCTCTTCAGGAGATCCAAGCCAT
LOC_Os01g43550
Os.57382.1.S1_at--1013--251Chr01:25272331..25272355 (25 bp)
ATAGGCGGTTTTTATTCGTGCGTGT
LOC_Os01g43550
Os.57382.1.S1_at--178--8671Chr01:25272305..25272329 (25 bp)
TGTGGCATGATCTCTCTCAAGTCAA
LOC_Os01g43550
Os.57382.1.S1_at--148--4951Chr01:25272218..25272242 (25 bp)
GCATTGACACTTTTGCATTCCTGTA
LOC_Os01g43550
Os.57382.1.S1_at--49--4951Chr01:25272204..25272228 (25 bp)
GCATTCCTGTACATAATTCTCGTGG
LOC_Os01g43550
Os.57382.1.S1_at--58--3151Chr01:25272190..25272214 (25 bp)
AATTCTCGTGGTTGGTGACTTTGTC
LOC_Os01g43550
Target Sequence 
TCTTGGGTCCCATGGATGACGACGTGTTCGAGTTCGACCATGTCTTGGAGGACGACGGCGTGCTGGGGCGACGGCTCTCG
CTATAGCTGCAAGAGAAAAGCTGTACTAGCTAGCTTTGACGAGCCTTTTAGGACAGTTGACTGTCAGCTCCAACCTCTTC
AGGAGATCCAAGCCATGTATAGGCGGTTTTTATTCGTGCGTGTTTGTGGCATGATCTCTCTCAAGTCAAGGTTCCAAGTT
TCAAATTTGCACAAGTGTATATACTTGTAATATTCGCAGGGATGTCAGTGCGCATTGACACTTTTGCATTCCTGTACATA
ATTCTCGTGGTTGGTGACTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis