Browse Element(s) Details


Os.57477.1.S1_x_at

Description gb:AU070261
DB_XREF= gi:5005496
DB_XREF=AU070261
CLONE=S20566_3A
TID=Os.57477.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57477 (NCBI UniGene Cluster)
UG_TITLE=AD622 mRNA for heat shock protein 70, partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4776011/11Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g622901/11Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g385301/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57477.1.S1_x_at--194--9173Chr11:28249086..28249110 (25 bp)
TGCCCAGACCACCATTGAGATCGAT
LOC_Os11g47760
Os.57477.1.S1_x_at--1040--1571Chr11:28249166..28249190 (25 bp)
AGCTCAACATGGATCTCTTCAGGAA
LOC_Os11g47760
Os.57477.1.S1_x_at--108--9571Chr11:28249181..28249205 (25 bp)
TCTTCAGGAAGTGTATGGAGCCTGT
LOC_Os11g47760
Os.57477.1.S1_x_at--550--8531Chr11:28249205..28249229 (25 bp)
TGGAGAAGTGCCTCAGGGATGCTAA
LOC_Os11g47760
Os.57477.1.S1_x_at--67--4291Chr11:28249215..28249239 (25 bp)
CCTCAGGGATGCTAAGATGGACAAG
LOC_Os11g47760
Os.57477.1.S1_x_at--76--9791Chr11:28249227..28249251 (25 bp)
TAAGATGGACAAGAGCTCTGTTCAT
LOC_Os11g47760
Os.57477.1.S1_x_at--273--3591Chr11:28249261..28249285 (25 bp)
CTTGTTGGTGGCTCCACTAGGATCC
LOC_Os11g47760
Os.57477.1.S1_x_at--813--7531Chr11:28249268..28249292 (25 bp)
GTGGCTCCACTAGGATCCCGAGGGT
LOC_Os11g47760
Os.57477.1.S1_x_at--229--3711Chr11:28249277..28249301 (25 bp)
CTAGGATCCCGAGGGTGCAGCAGCT
LOC_Os11g47760
Os.57477.1.S1_x_at--1085--5911Chr11:28249327..28249351 (25 bp)
GAGCTTTGCAAGAACATCAACCCAG
LOC_Os11g47760
Os.57477.1.S1_x_at--148--4751Chr11:28249357..28249381 (25 bp)
GCTGTTGCTTATGGTGCTGCTGTCC
LOC_Os11g47760
Target Sequence 
TGCCCAGACCACCATTGAGATCGATTCCNTGTATGAGGGCATCGANTTCTACTCAACCATCACCCGTGNCCAGGTTTGAG
GAGCTCAACATGGATCTCTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGCCTCAGGGATGCTAAGATGGACAAGAGCTC
TGTTCATGATGTTGTNCTTGTTGGTGGCTCCACTAGGATCCCGAGGGTGCAGCAGCTCCTGCAGGATNTCTTCAACGGCA
AGGAGCTTTGCAAGAACATCAACCCAGATGANGCTGTTGCTTATGGTGCTGCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57477.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis