Browse Element(s) Details


Os.5757.1.S1_at

Description gb:AK058855.1
DB_XREF= gi:32968873
TID=Os.5757.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-B10, full insert sequence.
FL= gb:AK058855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3836010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os12g38320Os.56976.1.S1_at11/1112+23486429..23487681expressed protein
LOC_Os12g38330NANA12+23490722..23491093expressed protein
LOC_Os12g38340Os.50144.1.S1_at11/1112+23492984..23493616expressed protein
LOC_Os12g38350NANA12+23496846..23497298expressed protein
LOC_Os12g38360Os.5757.1.S1_at10/1112+23499024..23499651expressed protein
LOC_Os12g38370OsAffx.32082.1.S1_at11/1112+23505656..23506057expressed protein
LOC_Os12g38380Os.18703.1.S1_at11/1112+23511836..23520923Suppressor of forked protein containing protein, expressed
LOC_Os12g38400Os.52643.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g38400Os.12994.1.S1_at11/1112+23521438..23527003Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5757.1.S1_at--707--331Chr12:23499072..23499096 (25 bp)
ATAAAGCGCGGGTGCACGATGCGCC
LOC_Os12g38360
Os.5757.1.S1_at--1128--10511Chr12:23499351..23499375 (25 bp)
TTCAGCGGGCTCACGGCGAACAAGC
LOC_Os12g38360
Os.5757.1.S1_at--71--8452Chr12:23499426..23499450 (25 bp)
GGCCATGGCTGCATCTACAGAAATA
LOC_Os12g38360
Os.5757.1.S1_at--604--1571Chr12:23499464..23499488 (25 bp)
AGCTAGCTTGCTATAGAGCTATCGA
LOC_Os12g38360
Os.5757.1.S1_at--839--5911Chr12:23499479..23499503 (25 bp)
GAGCTATCGATCTTATCATGTAGTA
LOC_Os12g38360
Os.5757.1.S1_at--690--5251Chr12:23499562..23499586 (25 bp)
GAATCTCAATGTACCATGGACTGTA
LOC_Os12g38360
Os.5757.1.S1_at--969--9971Chr12:23499573..23499597 (25 bp)
TACCATGGACTGTACTAGTACTACT
LOC_Os12g38360
Os.5757.1.S1_at--739--7011Chr12:23499590..23499614 (25 bp)
GTACTACTACTTGTCATATCACGCT
LOC_Os12g38360
Os.5757.1.S1_at--609--7131Chr12:23499602..23499626 (25 bp)
GTCATATCACGCTCGTACCATGGAG
LOC_Os12g38360
Os.5757.1.S1_at--66--1851Chr12:23499610..23499634 (25 bp)
ACGCTCGTACCATGGAGCATCTTTA
LOC_Os12g38360
Os.5757.1.S1_at--320--5931NONE
GAGCATCTTTAAGGTACCGCTAGGT
NONE
Target Sequence 
ATAAAGCGCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTNCCGCCCAGCTGGCAGCCGCCCTCC
TCCTCCTCCNCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTAC
GCGGCTGCAGGCGCGANTGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGA
TGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGNCTGCCTGCAG
GGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAG
CTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTG
ATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCAT
CTTTAAGGTACCGCTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis