Browse Element(s) Details


Os.5775.1.S1_at

Description gb:AK063741.1
DB_XREF= gi:32973759
TID=Os.5775.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F08, full insert sequence.
FL= gb:AK063741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4859011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48560Os.51593.1.S1_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48560Os.10125.1.S1_a_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5775.1.S1_at--900--3371Chr02:29740992..29741016 (25 bp)
CACCAATAGCGGGATCTGCAGTTGA
LOC_Os02g48590
Os.5775.1.S1_at--159--7891Chr02:29741036..29741060 (25 bp)
GGTTATGTTAGCATTGGGTACCCAT
LOC_Os02g48590
Os.5775.1.S1_at--1004--211Chr02:29741059..29741083 (25 bp)
ATTTGGTCTAATGGCCTCGGTCCTA
LOC_Os02g48590
Os.5775.1.S1_at--620--7791Chr02:29741077..29741101 (25 bp)
GGTCCTATTTGGCAGACACCACAAT
LOC_Os02g48590
Os.5775.1.S1_at--1150--1691Chr02:29741094..29741118 (25 bp)
ACCACAATGCTATCCTCAAGTCTGA
LOC_Os02g48590
Os.5775.1.S1_at--47--5071Chr02:29741195..29741219 (25 bp)
GCAGCAGGACGGGTTGATACTCACT
LOC_Os02g48590
Os.5775.1.S1_at--205--2911Chr02:29741226..29741250 (25 bp)
AAGGAGCTGGCCACTTCCAAATGGA
LOC_Os02g48590
Os.5775.1.S1_at--584--891Chr02:29741251..29741275 (25 bp)
AGGCCCTGCTTTTGATGCACGAATG
LOC_Os02g48590
Os.5775.1.S1_at--951--6752Chr02:29741288..29741312 (25 bp)
GTTAATTTCATCAAATCCTTGCCCA
LOC_Os02g48590
Os.5775.1.S1_at--66--3511Chr02:29741398..29741422 (25 bp)
CATGGTGTGTATTTTCTCATCTTGT
LOC_Os02g48590
Os.5775.1.S1_at--397--3031Chr02:29741454..29741478 (25 bp)
AATCCGTGTTTCTTTCGAAGCCTAG
LOC_Os02g48590
Target Sequence 
CACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATG
GCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATNCGTCATGGGAACTAAAGA
TGGCTTCACAAGTGTANNNCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAG
CTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCC
AAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAG
TGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGA
AGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis