Browse Element(s) Details


Os.5777.1.S1_at

Description gb:AU172809
DB_XREF= gi:12622596
DB_XREF=AU172809
CLONE=E30978
TID=Os.5777.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710A02.22 (P0710A02.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g410206/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5777.1.S1_at--563--4431Chr01:23554578..23554602 (25 bp)
GCCATCGCCGAACAGGGCTCCGGCT
NONE
Os.5777.1.S1_at--190--4231Chr01:23554585..23554609 (25 bp)
CCGAACAGGGCTCCGGCTGCGTCGG
NONE
Os.5777.1.S1_at--906--10631Chr01:23554659..23554683 (25 bp)
TTCGCGAGGGCAAACCCGTTCCTGT
NONE
Os.5777.1.S1_at--1099--9311Chr01:23554660..23554684 (25 bp)
TCGCGAGGGCAAACCCGTTCCTGTT
NONE
Os.5777.1.S1_at--13--5131Chr01:23554668..23554692 (25 bp)
GCAAACCCGTTCCTGTTCGTCGACG
NONE
Os.5777.1.S1_at--358--6991Chr01:23554905..23554929 (25 bp)
GTACGCATACAATCTCTCAATCCGA
LOC_Os01g41020
Os.5777.1.S1_at--390--9951Chr01:23554906..23554930 (25 bp)
TACGCATACAATCTCTCAATCCGAA
LOC_Os01g41020
Os.5777.1.S1_at--1162--1831Chr01:23554907..23554931 (25 bp)
ACGCATACAATCTCTCAATCCGAAG
LOC_Os01g41020
Os.5777.1.S1_at--164--4971Chr01:23554909..23554933 (25 bp)
GCATACAATCTCTCAATCCGAAGAA
LOC_Os01g41020
Os.5777.1.S1_at--522--3551Chr01:23554910..23554934 (25 bp)
CATACAATCTCTCAATCCGAAGAAT
LOC_Os01g41020
Os.5777.1.S1_at--252--3191Chr01:23554922..23554946 (25 bp)
CAATCCGAAGAATTGAGCCGCCGCC
LOC_Os01g41020
Target Sequence 
GCCATCGCCGAACAGGGCTCCGGCTGCGTCGGCGGCGGCGGGGGTGGCNAGGTGGAGAAGCTCAGGCGGGAGNTCCAGGC
CTTCGCGAGGGCAAACCCGTTCCTGTTCGTCGACGGCCGCNNNNNNNNNNACGACGCGCGACATGGTCAAGCTGGACATC
GAGGACCACGAGCGCCGCCANCCTTGCATCGACGTCTCGGGCTTGCTCGCGCGCTACGACGAGCGGGAGGAGAGGAGGCT
TCGCGCCGGGAACAAGCGGGCTAANCTCCTCGCNAAGTTTGTNNNNNNAACCNTAACGAGGAATCTCTCAATTAACTGGA
ATTACGNGTACGCATACAATCTCTCAATCCGAAGAATTGAGCCGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis