Browse Element(s) Details


Os.5799.1.S1_s_at

Description gb:CA762245
DB_XREF= gi:25806284
DB_XREF=BR060003A20B12.ab1
CLONE=BR060003A20B12.ab1
TID=Os.5799.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5799 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188490.1 (A.thaliana) DEAD box helicase protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5881011/11ATP-dependent RNA helicase C1F7.02c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5799.1.S1_s_at--365--5191Chr03:33429506..33429614 (25 bp)
GCAATCGCACCTTGAGAATATCGTT
LOC_Os03g58810
Os.5799.1.S1_s_at--241--6211Chr03:33429448..33429472 (25 bp)
GAGGCATACAGATCCTACATCTTGG
LOC_Os03g58810
Os.5799.1.S1_s_at--947--9871Chr03:33429433..33429457 (25 bp)
TACATCTTGGCATACGACTCACACT
LOC_Os03g58810
Os.5799.1.S1_s_at--350--6011Chr03:33428818..33428842 (25 bp)
GAGAGCTCTGCATCCAAACATCGGA
LOC_Os03g58810
Os.5799.1.S1_s_at--241--1651Chr03:33428752..33428776 (25 bp)
AGCGCTGCAAATCCCTACGGAAGAA
LOC_Os03g58810
Os.5799.1.S1_s_at--314--9711Chr03:33428668..33428692 (25 bp)
TCAAAAGACCCTTGGCCCTATGAAA
LOC_Os03g58810
Os.5799.1.S1_s_at--399--10211Chr03:33428599..33428623 (25 bp)
TATTCTGTCCAATGTATCCACTTAG
LOC_Os03g58810
Os.5799.1.S1_s_at--104--6911Chr03:33428586..33428610 (25 bp)
GTATCCACTTAGTCTAGCACTCGAG
LOC_Os03g58810
Os.5799.1.S1_s_at--589--3051Chr03:33428540..33428564 (25 bp)
AATCGTGTGCCAAATTCATTGCTGG
LOC_Os03g58810
Os.5799.1.S1_s_at--497--9591Chr03:33428525..33428549 (25 bp)
TCATTGCTGGTATCCTGAATCCTGA
LOC_Os03g58810
Os.5799.1.S1_s_at--34--6291Chr03:33428502..33428526 (25 bp)
GATGTTTGCAATTGACAGCGTTCTA
LOC_Os03g58810
Target Sequence 
GCAATCGCACCTTGAGAATATCGTTGGCGAGAATTATTTCCTGAATCAGTCAGCTAAAGAGGCATACAGATCCTACATCT
TGGCATACGACTCACACTCCATGAAAGACATTTTTGATGTTCATAATCTCAATCTGAAGGATGTNGCAGCGTCTTTCTGT
TTTAAGAACCCACCAAAGGTAAACATCGATTTGGAGAGCTCTGCATCCAAACATCGGAGGAAGATGAGGAAAGTGGACGG
TGGAAGGAGGCATGGCATCAGCGCTGCAAATCCCTACGGAAGAAAAGGCGGTGATGACAAAAGGCAGTTTGCAAGATTCT
AGAGATGTTCAATACATGGAGTCTCAAAAGACCCTTGGCCCTATGAAATTTTGATAGATAACTTATATTATCGCATCATG
CTATAACACAATTATTCTGTCCAATGTATCCACTTAGTCTAGCACTCGAGATTGTTGAGAAATGAGAATGNAATCGTGTG
CCAAATTCATTGCTGGTATCCTGAATCCTGATGTTTGCAATTGACAGCGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5799.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis