Browse Element(s) Details


Os.5910.1.S1_at

Description gb:AK067760.1
DB_XREF= gi:32977778
TID=Os.5910.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119I03, full insert sequence.
FL= gb:AK067760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5436011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5910.1.S1_at--1098--7011Chr04:32136452..32136476 (25 bp)
GTACAAGGGCTTCTGGGATAACTAT
LOC_Os04g54360
Os.5910.1.S1_at--679--2011Chr04:32136472..32136496 (25 bp)
ACTATGTAGACTATTCACACCCTCT
LOC_Os04g54360
Os.5910.1.S1_at--476--3391Chr04:32136501..32136525 (25 bp)
CAGCGGTGCTTCACGCACTAATGAA
LOC_Os04g54360
Os.5910.1.S1_at--428--5211Chr04:32136541..32136565 (25 bp)
GAATTTTTTGTGAACTTCCTAGTGG
LOC_Os04g54360
Os.5910.1.S1_at--1138--5571Chr04:32136565..32136589 (25 bp)
GAAATGCTTCAATGCCTTACTCAAC
LOC_Os04g54360
Os.5910.1.S1_at--108--5471Chr04:32136613..32136637 (25 bp)
GAACTGATTAACTTTGTCCTGAAAT
LOC_Os04g54360
Os.5910.1.S1_at--1068--551Chr04:32136641..32136665 (25 bp)
ATCCTCAGATTAGACATGGGCGGCC
LOC_Os04g54360
Os.5910.1.S1_at--272--791Chr04:32136656..32136680 (25 bp)
ATGGGCGGCCGTTTATACTACCTGT
LOC_Os04g54360
Os.5910.1.S1_at--572--5331Chr04:32136688..32136712 (25 bp)
GAAGTACAGCAACCACAGATGTGAC
LOC_Os04g54360
Os.5910.1.S1_at--1070--5931Chr04:32136768..32136792 (25 bp)
GAGCAGCGTCCATTATATACATTCA
LOC_Os04g54360
Os.5910.1.S1_at--876--10171Chr04:32136783..32136807 (25 bp)
TATACATTCATAACTCGCAACCACC
LOC_Os04g54360
Target Sequence 
GTACAAGGGCTTCTGGGATAACTATGTAGACTATTCACACCCTCTGCTTCAGCGGTGCTTCACGCACTAATGAATGTGTA
TCAACATTAGAATTTTTTGTGAACTTCCTAGTGGAAATGCTTCAATGCCTTACTCAACAGCCACACGTGAACACAGTAAC
AGAACTGATTAACTTTGTCCTGAAATTACATCCTCAGATTAGACATGGGCGGCCGTTTATACTACCTGTAGTTGATGAAG
TACAGCAACCACAGATGTGACTGGCACAGGTAAACATCAGAAAGAGCCAAGATTGCCATGGATTAGGCTGTTATTTGAGC
AGCGTCCATTATATACATTCATAACTCGCAACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis