Browse Element(s) Details


Os.5913.1.S1_at

Description gb:AK121530.1
DB_XREF= gi:37991153
TID=Os.5913.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030N24, full insert sequence.
FL= gb:AK121530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5797011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed
LOC_Os04g57950OsAffx.14460.1.S1_at11/114+34300621..34304516Dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os04g57970Os.5913.1.S1_at11/114+34314834..34317184expressed protein
LOC_Os04g57970OsAffx.29486.1.S1_x_at1/114+34314834..34317184expressed protein
LOC_Os04g57980OsAffx.14461.1.S1_at11/114+34317934..34319194hypothetical protein
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5913.1.S1_at--1024--10851Chr04:34315825..34315849 (25 bp)
TTGGTTTTTCATTGTTCGCCGAAGA
LOC_Os04g57970
Os.5913.1.S1_at--1052--5411Chr04:34315866..34315890 (25 bp)
GAAGCCGGGCTAATCGTATCATCAT
LOC_Os04g57970
Os.5913.1.S1_at--1009--10851Chr04:34316859..34316883 (25 bp)
TTGGTACTTTGTTGTTAGGCTCTCC
LOC_Os04g57970
Os.5913.1.S1_at--969--10091Chr04:34316874..34316898 (25 bp)
TAGGCTCTCCTTTATCAGCTGTGGT
LOC_Os04g57970
Os.5913.1.S1_at--796--8451Chr04:34316898..34316922 (25 bp)
TGGCCTGGCATTTTGTTCTTAGCTT
LOC_Os04g57970
Os.5913.1.S1_at--526--10671Chr04:34316938..34316962 (25 bp)
TTCCTTTTCCTACAGCTCTTTTACT
LOC_Os04g57970
Os.5913.1.S1_at--893--7311Chr04:34316973..34316997 (25 bp)
GTGCTAATTGTCCAAAGTTCCTATG
LOC_Os04g57970
Os.5913.1.S1_at--168--6831Chr04:34317073..34317097 (25 bp)
GTTTAAATGTCAGCCACAGGTCAAT
LOC_Os04g57970
Os.5913.1.S1_at--348--1031Chr04:34317090..34317114 (25 bp)
AGGTCAATGACCATGCCACCAAATT
LOC_Os04g57970
Os.5913.1.S1_at--768--31Chr04:34317112..34317136 (25 bp)
ATTGGTCCACTGTTCTAATGTTGCT
LOC_Os04g57970
Os.5913.1.S1_at--893--2991Chr04:34317128..34317152 (25 bp)
AATGTTGCTATCTATTTGCTCACTG
LOC_Os04g57970
Target Sequence 
TTGGTTTTTCATTGTTCGCCGAAGAGATCGCCGGAGCGGAGGAAGCCGGGCTAATCGTATCATCATCTTCAGGATGTGGA
GGTTCCAGAATGAATGGATGGATGGTGGATGGTGGTGCTATGGAAGCTGCTAGACAGATGNCCTTAATGTGCTGAAGTGA
TGGTTTTTGAATTGGTACTTTGTTGTTAGGCTCTCCTTTATCAGCTGTGGTGGCCTGGCATTTTGTTCTTAGCTTTCTCT
TTCTCCTCCTTTCCTTTTCCTACAGCTCTTTTACTGATTATAACAGTGCTAATTGTCCAAAGTTCCTATGGAGTTAATTC
TGGTGGGTAGTGGGTGTGCTTGTGATTATATCTATACTGTTTGGATGCCACATTGTGGCTGTGTTGTTTAAATGTCAGCC
ACAGGTCAATGACCATGCCACCAAATTGGTCCACTGTTCTAATGTTGCTATCTATTTGCTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis