Browse Element(s) Details


Os.5920.1.S1_at

Description gb:AK064172.1
DB_XREF= gi:32974190
TID=Os.5920.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.11 (P0042A10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A05, full insert sequence.
FL= gb:AK064172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g526609/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5920.1.S1_at--600--7151Chr01:30600242..30600266 (25 bp)
GTCTACCCGCCAAACAAGTGGATCG
LOC_Os01g52660
Os.5920.1.S1_at--653--8311Chr01:30600104..30600128 (25 bp)
GGCTAACCAGCTGGCTCTAGCTACT
LOC_Os01g52660
Os.5920.1.S1_at--736--811Chr01:30599935..30599959 (25 bp)
ATGGTGTTCCACTTGCAGTAGCGAC
LOC_Os01g52660
Os.5920.1.S1_at--550--7471Chr01:30599896..30599920 (25 bp)
GTGTGTGTACGTTCAGTTCTAGTTT
LOC_Os01g52660
Os.5920.1.S1_at--322--6971Chr01:30599866..30599890 (25 bp)
GTAGCGCGGCTGTGATGTTTCGATC
LOC_Os01g52660
Os.5920.1.S1_at--133--10311Chr01:30599849..30599873 (25 bp)
TTTCGATCGCTTGTTGTCAGTGTAG
LOC_Os01g52660
Os.5920.1.S1_at--803--7431Chr01:30599830..30599854 (25 bp)
GTGTAGCATTGGTGGTTTCTCCATT
LOC_Os01g52660
Os.5920.1.S1_at--951--10591Chr01:30599814..30599838 (25 bp)
TTCTCCATTGGTTCTCTGTTCAAAC
LOC_Os01g52660
Os.5920.1.S1_at--789--2511Chr01:30599792..30599816 (25 bp)
AACTTGTATGATTTGTCCGCTTGCA
LOC_Os01g52660
Os.5920.1.S1_at--335--5591Chr01:30599742..30599766 (25 bp)
GAAATCTAGGCCATCTGGTTCACTC
NONE
Os.5920.1.S1_at--93--1211Chr01:30599675..30599734 (25 bp)
AGTTCCAAACAAAGTCGTCGTCCAT
NONE
Target Sequence 
GTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCTCAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCAT
CTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCT
ACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGAT
CGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACT
TGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGAT
CGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAATTT
TGCAAATTTTTTAANGACGNTTGAAATCTAGGCCATCTGGTTCACTCGATCCAAAGTTCCAAACAAAGTCGTCGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis