Browse Element(s) Details


Os.5951.1.S1_at

Description gb:AK109544.1
DB_XREF= gi:32994753
TID=Os.5951.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D08, full insert sequence.
FL= gb:AK109544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0528411/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5951.1.S1_at--774--1891Chr06:2381342..2381366 (25 bp)
ACGTCGAGCGAGTCGGTGAACCAGT
LOC_Os06g05284
Os.5951.1.S1_at--386--1691Chr06:2381361..2381385 (25 bp)
ACCAGTTGAAGGACGATGGTACGGA
LOC_Os06g05284
Os.5951.1.S1_at--436--8111Chr06:2381470..2381494 (25 bp)
GGACGACGGCAGCAACTGCCCGATT
LOC_Os06g05284
Os.5951.1.S1_at--1131--2491Chr06:2381483..2381507 (25 bp)
AACTGCCCGATTTGCTTGGACGGCG
LOC_Os06g05284
Os.5951.1.S1_at--204--3791Chr06:2381598..2381622 (25 bp)
CTCGGGTGAAGCTAGGGACCTGCCC
LOC_Os06g05284
Os.5951.1.S1_at--266--8991Chr06:2381604..2381628 (25 bp)
TGAAGCTAGGGACCTGCCCCATGTG
LOC_Os06g05284
Os.5951.1.S1_at--843--9051Chr06:2381685..2381709 (25 bp)
TGCATGTGCTGGTGGCCGATCCGAT
LOC_Os06g05284
Os.5951.1.S1_at--597--3471Chr06:2381726..2381750 (25 bp)
CAGGCGAGGTGGAATTTGTTTGTTC
LOC_Os06g05284
Os.5951.1.S1_at--1094--191Chr06:2381739..2381763 (25 bp)
ATTTGTTTGTTCAACGGTCAACTGA
LOC_Os06g05284
Os.5951.1.S1_at--234--10751Chr06:2381745..2381769 (25 bp)
TTGTTCAACGGTCAACTGATGGTTT
LOC_Os06g05284
Os.5951.1.S1_at--240--9891Chr06:2381777..2381801 (25 bp)
TACTACTACGTCGACAATGTTGACT
LOC_Os06g05284
Target Sequence 
ACGTCGAGCGAGTCGGTGAACCAGTTGAAGGACGATGGTACGGAGGAGATGGACGTCGACGACTACATCGGCGGCGGCAG
CGGCGGTGGCGGCGAGGCGTTGATCGGGATGAAGACGGTGGAGGCGCCGGACGACGGCAGCAACTGCCCGATTTGCTTGG
ACGGCGGCGGCGGCGGTGGGGAGAAGACGACGACGGAGGCGTGGGTGGAGACGCCGTGCGCGCACCGCTTCCACTCGCGG
TGCCTCGAGTCTTGGGCTCGGGTGAAGCTAGGGACCTGCCCCATGTGCCGGCGCGAGCTGACGGCGGCGGCGGCAGCGGC
GACGACGACGGCCGGANAGGATGTGCATGTGCTGGTGGCCGATCCGATGGTGGCGGATCCNCTGCAGGCGAGGTGGAATT
TGTTTGTTCAACGGTCAACTGATGGTTTNTAGTTNTACTACTACGTCGACAATGTTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis