Browse Element(s) Details


Os.5970.1.S1_at

Description gb:AK099943.1
DB_XREF= gi:32985152
TID=Os.5970.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.5970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121N21, full insert sequence.
FL= gb:AK099943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2481011/11Cytidylyltransferase family protein, expressed
LOC_Os08g128304/11Cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24740NANA10+12399027..12399683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24750NANA10+12400358..12401889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24760OsAffx.8172.1.S1_at6/1110+12402301..12403986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24770OsAffx.198.1.S1_at11/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24770OsAffx.20440.2.S1_x_at1/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24780NANA10+12407675..12408232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24800OsAffx.30522.1.S1_at9/1110+12422526..12423202hypothetical protein
LOC_Os10g24810Os.5970.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_x_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5970.1.S1_at--482--851Chr10:12424485..12424509 (25 bp)
ATGGCTCAGAAATATCGTGGCACTT
LOC_Os10g24810
Os.5970.1.S1_at--1047--3973Chr08:7603463..7603486 (24 bp)
CGTGGCACTTATTTTTGCACTAAAA
LOC_Os08g12830
Os.5970.1.S1_at--798--8271Chr10:12424433..12424457 (25 bp)
GGCATGCTGCCACATTTATTCAAGA
LOC_Os10g24810
Os.5970.1.S1_at--574--6532Chr08:7603546..7603565 (20 bp)
GATTTCAACAGTTACTCGGCTATAG
LOC_Os08g12830
Os.5970.1.S1_at--889--4852Chr08:7603602..7603625 (24 bp)
GCATGGGAACCAGCTCAAGGAACTA
LOC_Os08g12830
Os.5970.1.S1_at--892--9831Chr10:12424310..12424334 (25 bp)
TAAATTAAAAATCTGCCGTCGCCCT
LOC_Os10g24810
Os.5970.1.S1_at--611--4491Chr10:12424296..12424320 (25 bp)
GCCGTCGCCCTTTTGGCAGGAAAAT
LOC_Os10g24810
Os.5970.1.S1_at--52--8171Chr10:12424278..12424302 (25 bp)
GGAAAATCCACTTAACAGCCAGAAT
LOC_Os10g24810
Os.5970.1.S1_at--1118--7771Chr10:12424183..12424207 (25 bp)
GGTGCTCAGCAAACCATTGTTGTAT
LOC_Os10g24810
Os.5970.1.S1_at--1032--6651Chr10:12424118..12424142 (25 bp)
GTTGCATACTCCCTAATTGTACCAA
LOC_Os10g24810
Os.5970.1.S1_at--330--5612Chr08:7603825..7603849 (25 bp)
GACAATGAGCTGTGCGATGACCGTG
LOC_Os08g12830
Target Sequence 
ATGGCTCAGAAATATCGTGGCACTTATTTTTGCACTAAAACAGAGGGGGGACGGCATGCTGCCACATTTATTCAAGATAA
TTCTACAACAGAGATTTCAACAGTTACTCGGCTATAGAAAGGTCATAGTCAGTTATAATTGATGGCCATTCAGCATGGGA
ACCAGCTCAAGGAACTAAATTAAAAATCTGCCGTCGCCCTTTTGGCAGGAAAATCCACTTAACAGCCAGAATTCACATAC
ATGATTCTTTTTTTCTTTTTACTTTTGTTGTCCCTGGAGGGGACAATATTCATAGCTGAACAGGTGCTCAGCAAACCATT
GTTGTATACTTGTATGTTATTACTTAACAGTGTGTGGAGTGATTAGAGTTGCATACTCCCTAATTGTACCAAACGACACT
TATGAGACAATGAGCTGTGCGATGACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis