Browse Element(s) Details


Os.5996.1.S1_at

Description gb:AK109492.1
DB_XREF= gi:32994701
TID=Os.5996.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C11, full insert sequence.
FL= gb:AK109492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0110011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5996.1.S1_at--1076--1451Chr07:55538..55562 (25 bp)
AGAAGATTGTGCTTGTCGGAGCCAA
LOC_Os07g01100
Os.5996.1.S1_at--344--1991Chr07:55488..55512 (25 bp)
ACTCCGTCTCCAGATGTAGCTGGTA
LOC_Os07g01100
Os.5996.1.S1_at--714--1151Chr07:55454..55478 (25 bp)
AGTCTCTAGTCTTCTTTAGCTGTGC
LOC_Os07g01100
Os.5996.1.S1_at--639--10291Chr07:55388..55412 (25 bp)
TTTCCTCTTTTAATTATGCCCTCTC
LOC_Os07g01100
Os.5996.1.S1_at--10--1151Chr07:55361..55385 (25 bp)
AGTCCCAGTTCGAGTGTGTCATGTG
LOC_Os07g01100
Os.5996.1.S1_at--641--8731Chr07:55345..55369 (25 bp)
TGTCATGTGTGAGTGCTGTCTGTAA
LOC_Os07g01100
Os.5996.1.S1_at--711--2271Chr07:55288..55312 (25 bp)
AAATCTGCAGATTTTGCGGGCAAAT
LOC_Os07g01100
Os.5996.1.S1_at--468--8231Chr07:55270..55294 (25 bp)
GGCAAATCTAACACCGCAAACTCTG
LOC_Os07g01100
Os.5996.1.S1_at--417--2011Chr07:55251..55275 (25 bp)
ACTCTGCAGTTTCTCCTCAGATTAT
LOC_Os07g01100
Os.5996.1.S1_at--81--9731Chr07:55219..55243 (25 bp)
TCAATTCAATCCTGTTTCATCCACT
LOC_Os07g01100
Os.5996.1.S1_at--670--10531Chr07:55204..55228 (25 bp)
TTCATCCACTATCTTGTACTCCTAA
LOC_Os07g01100
Target Sequence 
AGAAGATTGTGCTTGTCGGAGCCAAGGACGACGACGCCCCCGCAGCCACTACTCCGTCTCCAGATGTAGCTGGTAACAAC
AACTAGTCTCTAGTCTTCTTTAGCTGTGCGCCTGTGCCTCTGTTAATTATTCATCACAGCACAGGGAGTATTTCCTCTTT
TAATTATGCCCTCTCCCAGTCCCAGTTCGAGTGTGTCATGTGTGAGTGCTGTCTGTAAGTAGTAGTACTAGTTAAGCGTG
GTTTGGTGGAAAATCTGCAGATTTTGCGGGCAAATCTAACACCGCAAACTCTGCAGTTTCTCCTCAGATTATTAGAGGTT
CAATTCAATCCTGTTTCATCCACTATCTTGTACTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis