Browse Element(s) Details


Os.6024.1.S1_at

Description gb:AK064844.1
DB_XREF= gi:32974862
TID=Os.6024.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.17 (P0681B11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G08, full insert sequence.
FL= gb:AK064844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4199010/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed
LOC_Os01g42000NANA1+24140040..24141457expressed protein
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0043269biological_processregulation of ion transport
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6024.1.S1_at--657--9291Chr01:24137551..24137575 (25 bp)
TCCGTTCCTGCATTTGTTCGTTTTC
LOC_Os01g41990
Os.6024.1.S1_at--937--9751Chr01:24137512..24137536 (25 bp)
TAATCCCTGGCAAATATACGCTTAT
LOC_Os01g41990
Os.6024.1.S1_at--692--8151Chr01:24137387..24137411 (25 bp)
GGAAATGCCTGACCAAATTATGAAA
LOC_Os01g41990
Os.6024.1.S1_at--447--2431Chr01:24137359..24137383 (25 bp)
AAAACCGGTAATGCTTGATCCATAT
LOC_Os01g41990
Os.6024.1.S1_at--209--831Chr01:24137330..24137354 (25 bp)
ATGGAGTTACCGTGCTTATCAGTAT
LOC_Os01g41990
Os.6024.1.S1_at--635--2191Chr01:24137228..24137252 (25 bp)
ACACACATCATAGAGGTCCTTGCAG
LOC_Os01g41990
Os.6024.1.S1_at--723--5451Chr01:24137177..24137201 (25 bp)
GAACGAACTTGCATATTCTTCTTCA
LOC_Os01g41990
Os.6024.1.S1_at--185--6931Chr01:24137141..24137165 (25 bp)
GTATGGATGATGTACTGAGCCTCAA
LOC_Os01g41990
Os.6024.1.S1_at--1055--6851Chr01:24137092..24137116 (25 bp)
GTTTGAGCTTCTGTTATCAACTTAT
LOC_Os01g41990
Os.6024.1.S1_at--234--6151NONE
GAGGTTCAGCTGTAGTAATTCTTAA
NONE
Os.6024.1.S1_at--1008--211Chr01:24136997..24137021 (25 bp)
ATTTGTGCTTCTGTTTCTGAATGAA
LOC_Os01g41990
Target Sequence 
TCCGTTCCTGCATTTGTTCGTTTTCTTCTCTCTTTTTTTTAATCCCTGGCAAATATACGCTTATTTGATTGAATTGATTG
TATCATTATGTGTTGCTGTAAATATTGTGCAATGTTATCTAGTGAAAAATCTCAATTGTTATCCAGGAACAACATAGATG
ATCNGGAAATGCCTGACCAAATTATGAAATAAAAAACCGGTAATGCTTGATCCATATTATTATGGAGTTACCGTGCTTAT
CAGTATTTGAAACTGGCTGTTTAATATATGCACAAACAAGATGATGAAGTTTGCTTTTGAAGCACTTGAAAGAAAGAACT
CAAACACACATCATAGAGGTCCTTGCAGTGCTTGTTTAATTTGCAAGCCTTTCTGAACGAACTTGCATATTCTTCTTCAC
AAAAAACAGAGTATGGATGATGTACTGAGCCTCAATTGACATAGAGGTCAAAAATCAAAGTTTGAGCTTCTGTTATCAAC
TTATCATTATTTATTTTTGAGAGGTTCAGCTGTAGTAATTCTTAAAAGTGCAGCAAAAGGATTTTGCTTGCTTAATTTGT
GCTTCTGTTTCTGAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis