Browse Element(s) Details


Os.6067.1.S1_at

Description gb:AK063232.1
DB_XREF= gi:32973250
TID=Os.6067.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F06, full insert sequence.
FL= gb:AK063232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3536011/11Actin polymerization factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0009825biological_processmultidimensional cell growth
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0005885cellular_componentArp2/3 protein complex
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6067.1.S1_at--25--2771Chr11:20228559..20228582 (24 bp)
AAGACCCGCGACGAGCGATGCAAGT
LOC_Os11g35360
Os.6067.1.S1_at--385--4051Chr11:20228703..20228727 (25 bp)
CGATCAGGGACGTCGACGGCATGTT
LOC_Os11g35360
Os.6067.1.S1_at--215--5751Chr11:20228717..20228741 (25 bp)
GACGGCATGTTCAACTCGCTGGATC
LOC_Os11g35360
Os.6067.1.S1_at--838--4231Chr11:20228742..20228766 (25 bp)
CCGAGTACTACGACATCCTGATGAA
LOC_Os11g35360
Os.6067.1.S1_at--1--8311Chr11:20229910..20229934 (25 bp)
GGCTTAGGATGTATATTGCGCTCAC
LOC_Os11g35360
Os.6067.1.S1_at--694--71Chr11:20229924..20229948 (25 bp)
ATTGCGCTCACTTGCTGATACCGTA
LOC_Os11g35360
Os.6067.1.S1_at--975--4171Chr11:20230002..20230026 (25 bp)
CCCAGCTGCCCCATGATATGAAAAT
LOC_Os11g35360
Os.6067.1.S1_at--195--10291Chr11:20230096..20230120 (25 bp)
TTTCCATTTGGCAGCTAGCTTCTGA
LOC_Os11g35360
Os.6067.1.S1_at--646--5991Chr11:20230123..20230147 (25 bp)
GAGAGCTTCCTTGTACTCTAGTACT
LOC_Os11g35360
Os.6067.1.S1_at--822--9111Chr11:20230153..20230177 (25 bp)
TGCTGAACTGCTGTACTACTAGTAT
LOC_Os11g35360
Os.6067.1.S1_at--484--6631Chr11:20230187..20230211 (25 bp)
GTTGTTTCCAACACGTTATGTGGCA
LOC_Os11g35360
Target Sequence 
AAGACCCGCGACGAGCGATGCAAGTNGGCGAACTGGATCGTGGTGCACCGCGCGATGATNGCGATCAGGGACGTCGACGG
CATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGN
CAACATGTGANCAGTGNCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCT
GATACCGTANANACCGTGTGAGTNTCATCTCTNTNGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATA
TGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTC
CATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTATAT
ATATATTGTTGTTTCCAACACGTTATGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis