Browse Element(s) Details


Os.6082.1.S1_at

Description gb:AK100499.1
DB_XREF= gi:32985708
TID=Os.6082.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099E22, full insert sequence.
FL= gb:AK100499.1 gb:AK062200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3556010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6082.1.S1_at--631--5691Chr12:21590459..21590483 (25 bp)
GACTTAGTCCGCAATCAACTTTCTG
LOC_Os12g35560
Os.6082.1.S1_at--620--2871NONE
AAGGGCGTCGCAACTTGAGAACGAA
NONE
Os.6082.1.S1_at--407--6091Chr12:21591137..21591161 (25 bp)
GAGTCCGAATCGCTTCGGCTTGAAA
LOC_Os12g35560
Os.6082.1.S1_at--107--5051Chr12:21591167..21591191 (25 bp)
GCAGAGTCCGACGATTCATCTTCAG
LOC_Os12g35560
Os.6082.1.S1_at--324--10551Chr12:21591181..21591205 (25 bp)
TTCATCTTCAGGCAGCAACCAGCGG
LOC_Os12g35560
Os.6082.1.S1_at--1144--1611Chr12:21591201..21591225 (25 bp)
AGCGGCCTGCTGATAAGGGCTTCTG
LOC_Os12g35560
Os.6082.1.S1_at--361--6171Chr12:21591286..21591310 (25 bp)
GAGGATATTTCCTGCAGAGTTGCAC
LOC_Os12g35560
Os.6082.1.S1_at--135--5051Chr12:21591299..21591323 (25 bp)
GCAGAGTTGCACATTCTTTCAATTT
LOC_Os12g35560
Os.6082.1.S1_at--1078--10332Chr12:21591332..21591356 (25 bp)
TTCTTTTTTCCCCTGGAGAGCCCAG
LOC_Os12g35560
Os.6082.1.S1_at--816--5991Chr12:21591347..21591371 (25 bp)
GAGAGCCCAGTATTCACAAGTAGAT
LOC_Os12g35560
Os.6082.1.S1_at--715--10011Chr12:21591412..21591436 (25 bp)
TAGCAAATCGCGGTTCCATCAAGAG
LOC_Os12g35560
Target Sequence 
GACTTAGTCCGCAATCAACTTTCTGCTGAAGAAGCAAGGGCGTCGCAACTTGAGAACGAAATTTCGGATCTTCAACAAAG
GCTGCAGAAGATGGAGACCCTGGAAAAGGAGTCCGAATCGCTTCGGCTTGAAAAGGATGCAGAGTCCGACGATTCATCTT
CAGGCAGCAACCAGCGGCCTGCTGATAAGGGCTTCTGGAGGTGGAATGGATAAAAATTCATCGATACAGGTAGTAGCATA
CTAGCATTGGATGTATGGAGGATATTTCCTGCAGAGTTGCACATTCTTTCAATTTTTGCCCATTTCTTTTTTCCCCTGGA
GAGCCCAGTATTCACAAGTAGATCAAATATCGAAAAATGTTTACTCACAGAGAAACAGGATGATAGCAAATCGCGGTTCC
ATCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis