Browse Element(s) Details


Os.6108.2.S1_x_at

Description gb:NM_190572.1
DB_XREF= gi:34908227
GEN=P0406G08.29
TID=Os.6108.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406G08.29 (P0406G08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0406G08.29 (P0406G08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g626209/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6108.2.S1_x_at--941--6451NONE
GATCAAGCGCAAGGACCATCACTGT
NONE
Os.6108.2.S1_x_at--1149--6531Chr01:36586654..36586678 (25 bp)
GATTTTCCTAGTCTTTGTGCTGTAT
LOC_Os01g62620
Os.6108.2.S1_x_at--99--5171Chr01:36586540..36586644 (25 bp)
GCAAGCTTATATTCACTGGTTCTGG
LOC_Os01g62620
Os.6108.2.S1_x_at--75--1051Chr01:36586508..36586532 (25 bp)
AGGTGCTGTGCACAGTTTGCCTAAG
LOC_Os01g62620
Os.6108.2.S1_x_at--755--10831Chr01:36586337..36586361 (25 bp)
TTGTGTCCACTAGCTTTGGCATTGT
LOC_Os01g62620
Os.6108.2.S1_x_at--821--10811Chr01:36586316..36586340 (25 bp)
TTGTCCATTCTTTTGGGTTGGCATG
LOC_Os01g62620
Os.6108.2.S1_x_at--1025--7911Chr01:36586301..36586325 (25 bp)
GGTTGGCATGTGTATCTCATCTTTC
LOC_Os01g62620
Os.6108.2.S1_x_at--235--551Chr01:36586117..36586141 (25 bp)
ATCCCTATGACCTTGGTGTCTATGA
LOC_Os01g62620
Os.6108.2.S1_x_at--330--3071NONE
AATCTTGTTTCAGTGCTAGGGCCTA
NONE
Os.6108.2.S1_x_at--690--4711Chr01:36584885..36584909 (25 bp)
GCTGGCTCTGCCCAATATCAAGGAA
LOC_Os01g62620
Os.6108.2.S1_x_at--261--831Chr01:36584852..36584876 (25 bp)
ATGGTATTCGTTTCCGTACATCATA
LOC_Os01g62620
Target Sequence 
GATCAAGCGCAAGGACCATCACTGTATATGGATTAACAATTGTGTTGGACATGAAAACTACAAGATTTTCCTAGTCTTTG
TGCTGTATGCTGTAGTAGCAAGCTTATATTCACTGGTTCTGGTTATAGGAGGTGCTGTGCACAGTTTGCCTAAGAATGAA
CAATTAGGCAGTGATTCTTCTAGAACATCAATTGTTTCAAATGTGCAGATCATTTGCGGGGTATTTTTGTGTCCACTAGC
TTTGGCATTGTCCATTCTTTTGGGTTGGCATGTGTATCTCATCTTTCATAATAAAACTACTATTGAGTACCATGAAGGAG
TTAGGGCAATGTGGTTGGCAGAAAAGGCTGGAAATCTATACCACCATCCCTATGACCTTGGTGTCTATGAGAATCTTGTT
TCAGTGCTAGGGCCTAATGCGTTGTGCTGGCTCTGCCCAATATCAAGGAATACAGGCAATGGTATTCGTTTCCGTACATC
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6108.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis