Browse Element(s) Details


Os.6109.1.S1_at

Description gb:AK099571.1
DB_XREF= gi:32984780
TID=Os.6109.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035E10, full insert sequence.
FL= gb:AK099571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5496011/11expressed protein
LOC_Os09g108701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6109.1.S1_at--483--8391Chr01:31935425..31935449 (25 bp)
GGCGCAGATTATGAGTTCCCACTAA
LOC_Os01g54960
Os.6109.1.S1_at--58--6751Chr01:31935377..31935401 (25 bp)
GTTCATGTGCATGGTGACCTTGGTT
LOC_Os01g54960
Os.6109.1.S1_at--20--1731Chr01:31935361..31935385 (25 bp)
ACCTTGGTTACGTCACATGCTTGGA
LOC_Os01g54960
Os.6109.1.S1_at--722--2851Chr01:31935301..31935325 (25 bp)
AAGTCGCCACAAACGTCTTCGAGAA
LOC_Os01g54960
Os.6109.1.S1_at--51--2911Chr01:31935278..31935302 (25 bp)
AAGGTTGATGGCACATGGCGCATGT
LOC_Os01g54960
Os.6109.1.S1_at--757--8472Chr09:5955501..5955547 (24 bp)
TGGCGCATGTGTGTTCACCATGCAT
LOC_Os09g10870
Os.6109.1.S1_at--431--6051Chr01:31935159..31935183 (25 bp)
GAGATTTCTATCTTAGCAGCTGCAT
LOC_Os01g54960
Os.6109.1.S1_at--824--151Chr01:31935133..31935157 (25 bp)
ATTAGTCTATGTTTTCTCGAGTCAA
LOC_Os01g54960
Os.6109.1.S1_at--1107--10671Chr01:31935002..31935026 (25 bp)
TTCCATTTCTTTTTGGCGGCTAACT
LOC_Os01g54960
Os.6109.1.S1_at--509--4691Chr01:31934987..31935011 (25 bp)
GCGGCTAACTGGGAATGGACTTGAT
LOC_Os01g54960
Os.6109.1.S1_at--356--1171Chr01:31934957..31934981 (25 bp)
AGTAACTCGTACCAGGCTACTTCAC
LOC_Os01g54960
Target Sequence 
GGCGCAGATTATGAGTTCCCACTAAACATTGATCTGAAAAATGTAGAGGTTCATGTGCATGGTGACCTTGGTTACGTCAC
ATGCTTGGAAGTGGTTAAGACCAAAGGAAGAACATGGGGGAAGCAAGTCGCCACAAACGTCTTCGAGAAGGTTGATGGCA
CATGGCGCATGTGTGTTCACCATGCATCACACATAGAGGAATGAAAACCTTAGTTGATTTGGCATGGAAATTTTGCAGAA
AAGCTAGACAGGCAATACATGATTTCGAGATTTCTATCTTAGCAGCTGCATCATTAGTCTATGTTTTCTCGAGTCAATTG
TATCGATGCTTAAGTTTTCAAACTGAATTTTTTGTGGTTTCGTTTGAGATTCCATAGTGGTTGGCATATTATGTCACTTG
AGATTATATATGACTAGCTATTTTTCCATTTCTTTTTGGCGGCTAACTGGGAATGGACTTGATCTGCAAGTAACTCGTAC
CAGGCTACTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis