Browse Element(s) Details


Os.6152.1.S2_at

Description gb:CB643609
DB_XREF= gi:29638600
DB_XREF=OSJNEb04G06.r
CLONE=OSJNEb04G06
TID=Os.6152.1
CNT=8
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.6152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013054O21, full insert sequence
FL= gb:AK066089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g089005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6152.1.S2_at--901--3751Chr05:4905446..4905470 (25 bp)
CTCTCGGAATGGTGGAATCTCTCTT
LOC_Os05g08900
Os.6152.1.S2_at--881--8591Chr05:4905455..4905479 (25 bp)
TGGTGGAATCTCTCTTTTTTACGGT
LOC_Os05g08900
Os.6152.1.S2_at--1030--3151Chr05:4905541..4905565 (25 bp)
AATTGACTACCATATCCATTATCTA
LOC_Os05g08900
Os.6152.1.S2_at--83--5011Chr05:4905677..4905701 (25 bp)
GCATGTGCATTTCGCTTGTTTTACA
LOC_Os05g08900
Os.6152.1.S2_at--635--8891Chr05:4905778..4905802 (25 bp)
TGACGCGCTTTGACCAGGCTAGGTG
LOC_Os05g08900
Os.6152.1.S2_at--830--2351NONE
AAAGCCAGATTCCAAGCTCCTTGTG
NONE
Os.6152.1.S2_at--840--5071NONE
GCACGCGTTTTGACCCATTGTCCGA
NONE
Os.6152.1.S2_at--618--4191NONE
CCCGATGTATTTTGAGTTACTCCTC
NONE
Os.6152.1.S2_at--704--6771NONE
GTTACTCCTCCAGATAGAGGTCGTT
NONE
Os.6152.1.S2_at--894--10031NONE
TAGAGGTCGTTTACTTGCGCGGTGA
NONE
Os.6152.1.S2_at--711--10451NONE
TTACTTGCGCGGTGAGACTTTTGTC
NONE
Target Sequence 
CTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGAATTGTCCA
GTATTTGTTATAAACAATTGACTACCATATCCATTATCTAAAAAAGTGACTACCTTATTAAAATAAGCAACCAAGTAATA
CTAACATACTAGATTAAAAAAATATTTTATCTATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCA
TTTCGCTTGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTG
TCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGCGACGGTGGGAGTGGGACGATGGTGAGATGTAAAAGCCAG
ATTCCAAGCTCCTTGTGGAAAAAGGTGGGGGGCACGCGTTTTGACCCATTGTCCGACCCGTTGGGTCTGCCCCCCTGTGG
AGTGCTTATGTCCCCCCGATGTATTTTGAGTTACTCCTCCAGATAGAGGTCGTTTACTTGCGCGGTGAGACTTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6152.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis