Browse Element(s) Details


Os.6169.1.S1_at

Description gb:AU166551
DB_XREF= gi:12404950
DB_XREF=AU166551
CLONE=C30143
TID=Os.6169.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.4 (P0431G06.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7232011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein
LOC_Os01g72290Os.20313.1.S1_s_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.1.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290Os.20313.2.S1_x_at11/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72290OsAffx.25546.1.S1_s_at1/111+42241533..42242773Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72300OsAffx.11827.1.S1_x_at11/111+42244715..42245955Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6169.1.S1_at--1158--2291Chr01:42253083..42253107 (25 bp)
AAATGGTAGTAGACTGCCTGAAGCA
LOC_Os01g72320
Os.6169.1.S1_at--297--5431Chr01:42253022..42253046 (25 bp)
GAACCAGGCGTTTACATCACTCTAA
LOC_Os01g72320
Os.6169.1.S1_at--962--2611Chr01:42252999..42253023 (25 bp)
AACCGCCTTGCCTGGAGGTGCGAGA
LOC_Os01g72320
Os.6169.1.S1_at--452--5991Chr01:42252978..42253002 (25 bp)
GAGAGATCTCAAGCGGGTTCGGTTC
LOC_Os01g72320
Os.6169.1.S1_at--861--9431Chr01:42252883..42252984 (25 bp)
TCGGTTCAGCCGGAAGAGATTCAGC
LOC_Os01g72320
Os.6169.1.S1_at--548--6051Chr01:42252868..42252892 (25 bp)
GAGATTCAGCGAGACCCAGGCAGAA
LOC_Os01g72320
Os.6169.1.S1_at--394--6011Chr01:42252715..42252739 (25 bp)
GAGAGCTGAGATCCTTTACGATGTG
LOC_Os01g72320
Os.6169.1.S1_at--488--2951Chr01:42252690..42252714 (25 bp)
AAGGCGCTCTCTGTTCGGTTGCTAA
LOC_Os01g72320
Os.6169.1.S1_at--44--1331Chr01:42252650..42252674 (25 bp)
AGAGGAGATTCTCGCTATGTAAGAA
LOC_Os01g72320
Os.6169.1.S1_at--1097--2291Chr01:42252603..42252627 (25 bp)
AAAGGCGGCATCTCAGTTTTACGGT
LOC_Os01g72320
Os.6169.1.S1_at--135--9851Chr01:42252478..42252502 (25 bp)
TAAATGCATACGCAAGCGCATCGAT
LOC_Os01g72320
Target Sequence 
AAATGGTAGTAGACTGCCTGAAGCAGAATCATGCCATGAGGCTGAATGGGTGGAGCAAGACGAACCAGGCGTTTACATCA
CTCTAACCGCCTTGCCTGGAGGTGCGAGAGATCTCAAGCGGGTTCGGTTCAGCCGGAAGAGATTCAGCGAGACCCAGGCA
GAACAATGGTGGCAGGAGAACAGGNCAAGGGTATACCAGCATTNCAATGTTCGGATGGTTNAAAAATCAGCCTCCAGTAT
CGATAATGAGATTGCATCTCGGTGNCATTAGATTTGACATTTGGACAAAAGGAGAGCTGAGATCCTTTACGATGTGAAGG
CGCTCTCTGTTCGGTTGCTAACCTGGCCCCCATAAAAGAGGAGATTCTCGCTATGTAAGAAAGAGAAAAAGAAAGAGAGA
AAGAAAGGCGGCATCTCAGTTTTACGGTTTCTCCCTCGCTCCCCCTCCTTTTCCCCCCCTTGTGTGCAAAGTAGAGTGCT
TAANAAGTAATGTAAATGCTTAGTGGAANAAAGCTAATTTGTCAAATGTAAATGCATACGCAAGCGCATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis